Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00905 ATGGAGACTTCATCTTCTTCTTCGTCTTCTTCTTCTTCATGTATGAAATGGAGCTGTGAAAATGGGTATCAACCTCATGTTCTTGCTGTTGATGATAATCTTGTTGATCGTAAACTTGTTGAGAAATTGCTAAAAAACTCCTCTTGTAAAGTAACGACGGCAGAAAATGGTGTGAGTGCTTTGGAGTTCTTAGGATTGTTGGATGAACATAATCAACACACCAACTTTGAACGCTCCAATGAGTGGCAGCAGAGGTCAAAAGTGAATATGATCATCACTGATTATTGCATGCCAGGAATGTCTGGATATGAACTTCTCAAGAAAATCAAGAGATCTTCGAAGATGAAGGAAGTTCCTGTGGTGGTTGTATCATCAGAAAACGTGCCCACTCGCATCAACAAGTGTTTAGAGGAAGGGGCAGAGATGTTTATGCTGAAACCCTTGAAACAATCTGATGTTGTGAAGCTCAAATGCCAATTCATGAACTGA 489 39.88 METSSSSSSSSSSCMKWSCENGYQPHVLAVDDNLVDRKLVEKLLKNSSCKVTTAENGVSALEFLGLLDEHNQHTNFERSNEWQQRSKVNMIITDYCMPGMSGYELLKKIKRSSKMKEVPVVVVSSENVPTRINKCLEEGAEMFMLKPLKQSDVVKLKCQFMN* 163
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7009852 7012323 + CsaV3_5G011030.1 Csa05g00905 529292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00905 162 ProSiteProfiles Response regulatory domain profile. 26 161 IPR001789 GO:0000160
Csa05g00905 162 PANTHER TWO-COMPONENT RESPONSE REGULATOR 22 161 IPR045279 GO:0009736
Csa05g00905 162 Pfam Response regulator receiver domain 27 155 IPR001789 GO:0000160
Csa05g00905 162 SMART REC_2 25 157 IPR001789 GO:0000160
Csa05g00905 162 Gene3D - 19 162 - -
Csa05g00905 162 SUPERFAMILY CheY-like 25 155 IPR011006 -
Csa05g00905 162 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR17-LIKE 22 161 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00905 Csa-Chr5:7009852 Csa05g01629 Csa-Chr5:19338596 4.64E-57 dispersed
Csa05g00905 Csa-Chr5:7009852 Csa05g02375 Csa-Chr5:25975705 4.06E-53 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31719 PF00072 Response_reg 6.10E-21 CL0304 Csa TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00905 K14492 - csv:101208898 299.286