Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00916 ATGGAGACTTCGCCTTCCAATTCTGATCCTTACTCCAATTCTTCTTCACCCACAACTGCTCGTTCTTCCTCCAGATTTGCCTTATCCCTCCCTTCTCTCAATTTCTTCCGTTCCCCTTTGTCTGTCATCTTGGATTACTCTGGAATTCTTCCCACTAGGGCTGTTCGTCATGAATCCGACCCTGTAATTAACGCTGCTGCTACTCCTGATTTGCGGGTTTTTTCTCAAAATCAGAATCACTTGATACACACTTCTTCTCCTTCTTCTTCTCCTTCTTCTGTTACAACTTCTTCTGTTACAACTTCTTCCGCTAATACTATCCCTTCTGGGGAGGTTTCCATAAGGATTATTGGGTCTGGTGAGCAAGATCCTTCTCCCAGGGCCTTGTTGCCAAATCAGGTTGTTTATGAGCAAAATGGTAGACTCCCTGTTTCTGGGGATCAGCCGGAATCCCCTGATGAGGAACGAGTTCCATTGGTGTCTACTACTTCTTCGTCTATTCAACCTGGAGGCACTCGTGTTGATGGAGAATCTGGAAATGGAATGGAAGAGAGTGTCAATAGAGATTCTTCTTACCAGAGATATGATATTCAGCAGGTTGCCAGATGGATTGAACAAATTCTTCCATTCTCTTTGCTATTGCTGATTGTATTTATCCGTCAGCATTTAGAAGGGTTTTTCATCACAATTTGGATATCAGCTGTTATGTATAAGTCAAATGATATTGTCAAGAAACAGACTGCTCTAAAGGGGGAGAGGAGAATTTCTGTCCTTGCTGGAACTTCCATTACATTTTTGGTTCATGTAATTGGGATTTACTGGTGGTGTCATAGTGACGATCTTCTATACCCCTTAGTCATGCTTCCACCAAAGACTGTTCCACCTTTTTGGCATGCCTTGTTCATCATTTTGGTCAACGATACAATGGTGAGGCAGTTTGCAATGGCTCTCAAATGTTTTCTTCTTATTTACTACAAGAATGGCAGAGGCCACAATTTTCGTCGGCAGGGTCAAATTTTAACTCTTGTGGAATACACTCTTCTATTGTACCGTGCATTATTACCAACACCTGTATGGTACCGATTCTTCTTGAATAAAGATCAAGGGAGCCTCTTTTCATCATTGACAACAGGATTGTATTTAACTTTCAAGCTAACATCTGTTGTTGAGAAGATTCAATCATTTGTTACTGCATTTAAGGCTCTATCACAAAAAGAAGTCCATTATGGATCATATGCCACATCAGAACAGGTAAATGCTGCGGGAGATCTCTGTGCTATTTGCCAGGAGAAGATGAATGCTCCAATTCTATTACGTTGTAAGCACATCTTCTGTGAAGATTGTGTTTCTGAGTGGTTTGAAAGAGAAAGGACTTGCCCTCTTTGCCGAGCACTGGTAAAGCCTGCAGAACTCCGTACATTTGGTGATGGCTCGACCAGCTTACTCTTCCAGTTGTTCTAG 1461 41.96 METSPSNSDPYSNSSSPTTARSSSRFALSLPSLNFFRSPLSVILDYSGILPTRAVRHESDPVINAAATPDLRVFSQNQNHLIHTSSPSSSPSSVTTSSVTTSSANTIPSGEVSIRIIGSGEQDPSPRALLPNQVVYEQNGRLPVSGDQPESPDEERVPLVSTTSSSIQPGGTRVDGESGNGMEESVNRDSSYQRYDIQQVARWIEQILPFSLLLLIVFIRQHLEGFFITIWISAVMYKSNDIVKKQTALKGERRISVLAGTSITFLVHVIGIYWWCHSDDLLYPLVMLPPKTVPPFWHALFIILVNDTMVRQFAMALKCFLLIYYKNGRGHNFRRQGQILTLVEYTLLLYRALLPTPVWYRFFLNKDQGSLFSSLTTGLYLTFKLTSVVEKIQSFVTAFKALSQKEVHYGSYATSEQVNAAGDLCAICQEKMNAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPAELRTFGDGSTSLLFQLF* 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7113432 7120062 + CsaV3_5G011140.1 Csa05g00916 529303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00916 486 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 486 - -
Csa05g00916 486 CDD RING-HC_RNFT1_like 424 463 - -
Csa05g00916 486 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 399 472 IPR013083 -
Csa05g00916 486 ProSiteProfiles Zinc finger RING-type profile. 425 463 IPR001841 -
Csa05g00916 486 MobiDBLite consensus disorder prediction 1 23 - -
Csa05g00916 486 Pfam Zinc finger, C3HC4 type (RING finger) 423 466 - -
Csa05g00916 486 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 1 486 IPR044235 GO:0061630|GO:1904294
Csa05g00916 486 SUPERFAMILY RING/U-box 418 468 - -
Csa05g00916 486 ProSitePatterns Zinc finger RING-type signature. 440 449 IPR017907 -
Csa05g00916 486 MobiDBLite consensus disorder prediction 81 106 - -
Csa05g00916 486 MobiDBLite consensus disorder prediction 140 187 - -
Csa05g00916 486 MobiDBLite consensus disorder prediction 157 173 - -
Csa05g00916 486 SMART ring_2 425 462 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01716 Csa-Chr4:16557710 Csa05g00916 Csa-Chr5:7113432 0 dispersed
Csa05g00916 Csa-Chr5:7113432 Csa06g02296 Csa-Chr6:20621623 5.01E-09 dispersed
Csa05g00916 Csa-Chr5:7113432 Csa01g02418 Csa-Chr1:21459108 9.48E-07 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00916 - K22379 csv:101207430 931.784