Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00918 ATGGAAGGGTATGTAATGAGTGGTTTTGTGTTGGTTTTCCCGACCGCGATTGTGGTAGCGGTGGTGGCGATATTGCTCCATTTTTACTCCTACGGTGCGTGGAGGAGGACGGCGGAGGTGAGAAGGAAGTTGGAAGCACAAGGCGTGACTGGACCGCCACCGTCCATTTTGTATGGTAACTTGCCGGAGATGCAAAAGATCCAGTTGCAAACGGCTGCTATGGCTTCTCCATTGCATCGTGCTTCCGCGATTGTCGCTCATGATTATACATCAACTCTCTTTCCCTATTTCGTCGAGTGGAGGAAGCAATATGGGCCATTATACACGTACTCGACAGGGACAAGACAGCATCTTTACGCCAACAAGGTTGAACTTGTGAAGGACTTGAGCCTCTCCAACAATCTCAACGTGGGGAAGCCTTTCTATGTCACCAAAAAGCTTGCTCCCATTCTCGGCCAAAGCGTCGTCCGCTCTAACGGCGCTGTTTGGGCAGTGCAACGTAAGGTCATTGCCCCCGAGTTCTTCATGGACCGTGTCAGGGCCATGGCGTTCCACATGGTCGATGCTGCATCGTGTCTTATCAACAAATGGGAAAGCAGGGTTGGAGATGGAACCATCGAGATTGATGTGGATGAAGATCTAAGAGGGTTCTCGGCTGACGTCATTTCTAGAGCTTGCTTTGGGAGCTCATATGAGAAGGGGAAGGAGATTTTTTCCAAGCTTAGGGATCTTCAGAAGTTGATTTGTGAGGATAGCTTTCTGTTTGGTTACAGTTCATGGAGTGATAGATTTTTGCAACCACGCAAACACAAAAGAATAAATAGGTTGGAGAAGGAGATTGAGTCATTAATATGGGAGACGGTTCAACAAAGACAAAAAGAATGCTCTAAAACCTCCTCGTCGGACAAGGATTTGTTGCAGTTAATAATGGAAGCCACCATCGATGACCCAAATATAGGAGCCAAGGACTCTTCCAAGAACTTCATTGTTGACAACTGCAAGAGCATCTACTTCGCCGGCCATGAGTCCACCGCCGTGGCCGCCACCTGGTCCTTGATGCTCCTCGCCCTCCACCCCGAATGGCAAGACCGTATCCGCTCTGAGTTTGCTCAGGCTTGTCCCGACGGCCACCTCGACCCGACTGCCACTTCACAACTCAAATCGGTGAGTATGGTGATTCACGAAACGCTACGATTGTATCCACCAGCTGCATTTGTGGCGAGGGAGACATTTGCTGAGACACAACTTGGGAATGTGGTGGTTCCAAAGGGCGTTTGCTTATGGACTTTAATTCCGACGCTGCACAGAGAAGTTGAAATATGGGGAGAAGATGCAAATGAGTTCAAGCCAGAGCGATTCGCAAATGGGGTAGCCAAAGCATGCAAGTTCCCTCAGGCCTACGTGCCATTTGGGGCAGGCCCTAGACTATGTTTGGGGAAGAACTTCGCATTAGTTGAATTGAAGATCATAATTTCTCTTATAGTTTCCAAGTTTAGATTCTCGTTGTCTCCTGAGTATCACCATTGCCCTTCATATAGAATGATTGTGGAGCCTGCAAATGGTGTGAAGATTGTTTTCCAAAGGCTTTGA 1590 48.36 MEGYVMSGFVLVFPTAIVVAVVAILLHFYSYGAWRRTAEVRRKLEAQGVTGPPPSILYGNLPEMQKIQLQTAAMASPLHRASAIVAHDYTSTLFPYFVEWRKQYGPLYTYSTGTRQHLYANKVELVKDLSLSNNLNVGKPFYVTKKLAPILGQSVVRSNGAVWAVQRKVIAPEFFMDRVRAMAFHMVDAASCLINKWESRVGDGTIEIDVDEDLRGFSADVISRACFGSSYEKGKEIFSKLRDLQKLICEDSFLFGYSSWSDRFLQPRKHKRINRLEKEIESLIWETVQQRQKECSKTSSSDKDLLQLIMEATIDDPNIGAKDSSKNFIVDNCKSIYFAGHESTAVAATWSLMLLALHPEWQDRIRSEFAQACPDGHLDPTATSQLKSVSMVIHETLRLYPPAAFVARETFAETQLGNVVVPKGVCLWTLIPTLHREVEIWGEDANEFKPERFANGVAKACKFPQAYVPFGAGPRLCLGKNFALVELKIIISLIVSKFRFSLSPEYHHCPSYRMIVEPANGVKIVFQRL* 530
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7177442 7182492 + CsaV3_5G011160.1 Csa05g00918 529305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00918 529 PANTHER CYTOCHROME P450 714A1-RELATED 16 524 - -
Csa05g00918 529 PRINTS P450 superfamily signature 339 356 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g00918 529 PRINTS P450 superfamily signature 391 402 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g00918 529 PRINTS P450 superfamily signature 468 477 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g00918 529 PRINTS P450 superfamily signature 477 488 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g00918 529 Pfam Cytochrome P450 92 524 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g00918 529 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 470 479 IPR017972 GO:0005506|GO:0016705
Csa05g00918 529 Coils Coil 273 293 - -
Csa05g00918 529 PRINTS E-class P450 group I signature 101 120 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g00918 529 PRINTS E-class P450 group I signature 217 235 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g00918 529 PRINTS E-class P450 group I signature 328 345 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g00918 529 PRINTS E-class P450 group I signature 348 374 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g00918 529 PRINTS E-class P450 group I signature 390 408 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g00918 529 PRINTS E-class P450 group I signature 467 477 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g00918 529 PRINTS E-class P450 group I signature 477 500 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g00918 529 PANTHER CYTOCHROME P450 FAMILY MEMBER 16 524 - -
Csa05g00918 529 SUPERFAMILY Cytochrome P450 88 527 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g00918 529 Gene3D Cytochrome P450 34 529 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00949 Csa-Chr2:8951183 Csa05g00918 Csa-Chr5:7177442 4.67E-159 dispersed
Csa05g00918 Csa-Chr5:7177442 Csa05g03102 Csa-Chr5:31027128 2.99E-104 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00918 K20661 - csv:101216582 1050.43