Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00932 ATGGGCTGCATTTGCTCTAAGGGAATTCCAGCAAACGACTATGTTGCTGAGAATCATTCCAAAGAGAGGCATTTGAAGTCTAATAGATCTTCCAGACATGGGACTTCATTGAGGAAAGAAGAATCCGTGTTACATTCTGATGGAGGGCAAAGTGATGCAATGGCGCGATTGATATTGAATCAACCTGGGGAAGAGAATGCTGGATCAACACCCGAATCAGATGGGGCTGAGAAGGGAACATCCATTGGAAAAGTTAGCAGTGCCAAGCCCCTGCGTCAAGAACGTCCAACTATGGAGGATGGAGAAAAGAGAGTAGGAGTACACAATAACAATGCAACACCTAGAATATTCGGCGTTGTAATTGGGGAAAAAGGGGCTTTGGTTATAGCTGGATGGCCTTCTTGGCTGACATCTGTGGCTGGAGAAGCAATCAACGGATGGGTTCCTAGAAAGGCAGACTCTTTTCAGAAGTTGGATAAGATTGGACAAGGAACGTACAGCAGTGTGTACAGGGCCCGTGACATTGAAACAAACAAGATTGTTGCATTAAAGAAGGTGCGATTTGCTAACATGGACCCTGAAAGTGTTCGTTTTATGGCCAGGGAAATTCTTATCCTGCGTAGGCTTGACCACCCCAATGTCATGAAGCTTGAAGGTCTTATTACTTCAAGGGTGTCGGGCAGTTTATACCTCATATTTGAGTACATGGAACATGATCTTGCAGGGTTGGTAGCTACCTCAGGGATCAAGTTCACTGAAGCACAGATAAAATGCTATATGAAGCAACTGCTTTGTGGCCTTGAACATTGCCATGCGCAGGGAGTTTTGCACCGGGACATCAAGGGTTCAAACCTTCTGATTGACAACAGTGGTAATTTAAAGATAGGTGATTTTGGGCTCTCAACCTTTTTCCATCCCCGACAAAAGCAGCCTCTTACAAGTCGTGTGGTAACTTTGTGGTATCGGCCACCTGAGCTTTTGCTTGGTGCAACGGACTATGGAGTTTCTGTAGATTTGTGGAGTTCTGGCTGCATTCTTGCAGAACTATATGCTGGAAAGCCTATCATGCCTGGAAGGACAGAGGTGGAGCAACTACACAAGATCTTCAAACTCTGTGGCTCCCCTTCTGAAGAATACTGGAAAAAGTCAAAATTACCTCATGCCACCATTTTTAAACCTCAACATCCTTACAAGCGGTGTATTGCTGAGACATTCAAAGACTTCCCCTTCTCTGCATTGGCCCTTTTAGATGTCCTTCTTGCGGTAGAACCTGATGGCCGTGGAACAGCATCCTCTGCCCTTCGAAGTGAGTTCTTTACCACCAAACCGCTTCCCTCAGATCCCTCTGATTTGCCAAAGTACCCACCATGCAAGGAGTTTGATGTGAAGCTTCGAGACGAGGAAGCTCGAAGAAGAAGAGCTCCTATCAATGTTGCACGTGAGCATGAAGCAGCTCGTAAGTTTCCTCGAGAGTCAAAAGCAATTCCTGCACCACATGCAAATGCTGAATTGCAGGCATCCATACAGAAGAAACAAGCGCAGCAGAATTCTACAAGTGTCAGTGAAAAGTATAGTCACGAAGAGGACGGTGGCTCTGGCTTTTGCATCGAGCCACGAAAAGAAACAACACAAATGCAGCCAACTGGATTAGGTTCTTCACAAAACCTGAATGGGAATCTGGGTGATAATCAAAGAGGTTCTTCAGTCGGGGCAAAAGGTGCAGAACTTAGAAAACAGCGGTCTTTTATCCAGCATGGTGCTGGACAGTTATCTCGGTATTCCAATTCTGTTGCAGTTCGAGGTGGTTCACGATTTGACTGTGGTGGAGAAAGTAGTGCTAATTCACACTGGCCAGAAGAGTGTTTTAATGTGTCATATAACCATTTCAATGGTGGGGAATCTTCAGAGAAGCATGAATGGTCTCGCCATTTACTAGGCAGGCCAAAATCTTCATATAAGATGGATGAACAGTCATCTGGAAAAGAGTCTACTACGGTAAATTATCCAGTGTGTTATGCTCCGAAGAAGAGAATTCACTACTCAGGACCATTGATGCCTCCTGGTGGAAACCTTGAGGAAATGTTAAAAGAGCACGAGAAACAAATCCAGCATGCAGTGCGCAAGGCTCGTATTGACAAAGCTAAGACAAAAAAGACGTACGACGACAAAGGTCAAATGGAAGCATTGCTTCACCATGTGAAAAACGGCAATTGA 2214 45.08 MGCICSKGIPANDYVAENHSKERHLKSNRSSRHGTSLRKEESVLHSDGGQSDAMARLILNQPGEENAGSTPESDGAEKGTSIGKVSSAKPLRQERPTMEDGEKRVGVHNNNATPRIFGVVIGEKGALVIAGWPSWLTSVAGEAINGWVPRKADSFQKLDKIGQGTYSSVYRARDIETNKIVALKKVRFANMDPESVRFMAREILILRRLDHPNVMKLEGLITSRVSGSLYLIFEYMEHDLAGLVATSGIKFTEAQIKCYMKQLLCGLEHCHAQGVLHRDIKGSNLLIDNSGNLKIGDFGLSTFFHPRQKQPLTSRVVTLWYRPPELLLGATDYGVSVDLWSSGCILAELYAGKPIMPGRTEVEQLHKIFKLCGSPSEEYWKKSKLPHATIFKPQHPYKRCIAETFKDFPFSALALLDVLLAVEPDGRGTASSALRSEFFTTKPLPSDPSDLPKYPPCKEFDVKLRDEEARRRRAPINVAREHEAARKFPRESKAIPAPHANAELQASIQKKQAQQNSTSVSEKYSHEEDGGSGFCIEPRKETTQMQPTGLGSSQNLNGNLGDNQRGSSVGAKGAELRKQRSFIQHGAGQLSRYSNSVAVRGGSRFDCGGESSANSHWPEECFNVSYNHFNGGESSEKHEWSRHLLGRPKSSYKMDEQSSGKESTTVNYPVCYAPKKRIHYSGPLMPPGGNLEEMLKEHEKQIQHAVRKARIDKAKTKKTYDDKGQMEALLHHVKNGN* 738
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7416608 7440823 - CsaV3_5G011300.1 Csa05g00932 529319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00932 737 CDD STKc_CDK9_like 155 439 - -
Csa05g00932 737 Pfam Protein kinase domain 155 439 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g00932 737 SMART serkin_6 155 439 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g00932 737 PANTHER KINASE CDK9, PUTATIVE-RELATED 102 713 - -
Csa05g00932 737 Gene3D Phosphorylase Kinase; domain 1 142 237 - -
Csa05g00932 737 Coils Coil 688 708 - -
Csa05g00932 737 MobiDBLite consensus disorder prediction 17 109 - -
Csa05g00932 737 SUPERFAMILY Protein kinase-like (PK-like) 149 446 IPR011009 -
Csa05g00932 737 ProSitePatterns Serine/Threonine protein kinases active-site signature. 275 287 IPR008271 GO:0004672|GO:0006468
Csa05g00932 737 MobiDBLite consensus disorder prediction 539 566 - -
Csa05g00932 737 MobiDBLite consensus disorder prediction 505 521 - -
Csa05g00932 737 MobiDBLite consensus disorder prediction 505 571 - -
Csa05g00932 737 Gene3D Transferase(Phosphotransferase) domain 1 238 479 - -
Csa05g00932 737 PANTHER CELL DIVISION PROTEIN KINASE 102 713 - -
Csa05g00932 737 ProSitePatterns Protein kinases ATP-binding region signature. 161 184 IPR017441 GO:0005524
Csa05g00932 737 ProSiteProfiles Protein kinase domain profile. 155 439 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00932 Csa-Chr5:7416608 Csa05g03200 Csa-Chr5:31644976 1.52E-16 dispersed
Csa05g00932 Csa-Chr5:7416608 Csa02g00346 Csa-Chr2:2385123 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78231 PF00069 Pkinase 1.70E-67 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00932 - - csv:101214435 1489.17