Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00936 ATGACGGAGGAAGATGCCAAAGAACAGCTGAAGGGTACAGAGCTTCAGGCAAGAAAAACCCAGGTTACTCAGTTGCCTTGCGATGGCGATGGCATTTGCATGCTCTGTAAGGCCAAACCTTCAGACGTGGAGACTATCACTTGCAAAACTTGCGTCACCCCGTGGCATGTTAGTTGTCTCTCTAGTCCCCCTGAAACCCTGGCATCCACCCTTCAATGGGACTGTCCTGATTGTTCCACCCCTCCTGAAGATGTTATCCTTCCTCCGCCAGGCAACCATTCATTCCCCACCGCGCCTTCTAGTGACCTTGTCACGTCGATTCGAGCCATTGAAGCCGATGTCTCTCTTACTGACCGTGAAAAGGCAAACAAGCGCCAGGAACTTCTCAGTGGAAAGTTGCAGTCCGACAAGGACGACCATGATACCAACAAGGAAAAGATTAAAAAGGGAGATAATGTTTTTGATTTGATTGACGAGAGATTGAACTGTTCCTTCTGCATGCAGTTACCAGAAAGGCCTGTCACTACTCCATGTGGCCACAATTTCTGCTTAAAATGTTTCCAGAAGTGGATTGGACAAGGAAAGAACACTTGTGCAAAGTGCCGCTCCGTGATTCCCTCCAAAATGGCTAGCCAGCCCCGTATTAACTCCACCCTTGTAACGGTCATTCGTATGGCTAAATTGTCAAAATCCTTTGCTTCTGGGGGATCTCAGAAGGTTTATCATTTTGTTCACAATCAAAATAGACCAGATAAAGCCTATACCACTGACCGGGCACAAAAAAAAGGAAAAGCTAATGCTGCAAGTGGAAAAATATTTGTTACAATTCCATCTGATCATTTTGGTCCTATTCCTTCCGAAAATGATCCTGAGAGGAACCAGGGTGTTCTGGTTGGTGAATGCTGGGAGGACAGGCTAGAATGTCGTCAATGGGGTGCTCACTTTCCACATGTTGCTGGTATAGCAGGACAATCAAGTATTGGTGCACAGTCGGTGGTTCTTTCTGGTGGCTACCAAGATGATGAAGATCATGGGGAGTGGTTTCTCTACACTGGAAGTGGGGGTCGAGACCTTAGTGGGAACAAGCGTACAAGCAAGGATCAATCTTTTGACCAGAAATTTGAAAAATCAAATAAAGCGCTACAAGTTAGTTGTGCGAAAGGTTACCCTGTTAGGGTTGTCAGGTCTCATAAAGAAAAGCGTTCCTCTTATGCTCCAGAGAAGGGATTGCGGTATGATGGAGTTTATAGGATTGAGAAGTGTTGGCGTAAAGTGGGAATTCAGGGCTTTAAGGTATGTCGATATTTATTTGTTAGATGCGACAATGATCCTGCTCCATGGGCAAGTGATGAACATGGAGATCGACCTAGACCCTTACCTGCAATTTCAGAGTTGAAAAAAGCCACAGATATTACGGAGAGGAAAGAAGGGCCATCGTGGGACTTTGATGTGAAAGACAGTCGATGGAAGTGGGCTAAAGATCCACCAACGAGCAAGAAACCAGTTGAAGCTCAAGATTCTACTGGGAAGAGAACAAGGATAAAAATTAGGCAATCACATAATATGAGTGTTCAAGAAAAGTTACTGAAAGAGTTTAGCTGCCTTATTTGCCGGGAGGTGATGAGCTTGCCAATTACTACGCCTTGTGCTCATAACTTTTGCAAGTCATGCTTGGAAGGTGCTTTTGTGGGAAAGACATTCTTGAGAGAGAGAAAAACTGGTGGACGGGCTCTTAGATCTCAAAAGAATGTCTTGACTTGTCCTTGTTGCCCCACGGACATATCTGATTTTCTACAGAATCTTCAGGTAAATAGAGAGCTATTGGATGTGATAGAGACACTAAAAAGTAAGATTGAAGAAGAAAAGCTGTGTGAAGAAGAAGAGATAGACGAGGAAGAGGAGAATGATGAGGATGGGGATGAGAATGAAGGTAAGGGAAAAGATGAAAGCAACAGTCCTGTGGAAACAAGAAAGCGAGCAAAGGTGGTGGATGATTTAGAATAA 2004 44.56 MTEEDAKEQLKGTELQARKTQVTQLPCDGDGICMLCKAKPSDVETITCKTCVTPWHVSCLSSPPETLASTLQWDCPDCSTPPEDVILPPPGNHSFPTAPSSDLVTSIRAIEADVSLTDREKANKRQELLSGKLQSDKDDHDTNKEKIKKGDNVFDLIDERLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGQGKNTCAKCRSVIPSKMASQPRINSTLVTVIRMAKLSKSFASGGSQKVYHFVHNQNRPDKAYTTDRAQKKGKANAASGKIFVTIPSDHFGPIPSENDPERNQGVLVGECWEDRLECRQWGAHFPHVAGIAGQSSIGAQSVVLSGGYQDDEDHGEWFLYTGSGGRDLSGNKRTSKDQSFDQKFEKSNKALQVSCAKGYPVRVVRSHKEKRSSYAPEKGLRYDGVYRIEKCWRKVGIQGFKVCRYLFVRCDNDPAPWASDEHGDRPRPLPAISELKKATDITERKEGPSWDFDVKDSRWKWAKDPPTSKKPVEAQDSTGKRTRIKIRQSHNMSVQEKLLKEFSCLICREVMSLPITTPCAHNFCKSCLEGAFVGKTFLRERKTGGRALRSQKNVLTCPCCPTDISDFLQNLQVNRELLDVIETLKSKIEEEKLCEEEEIDEEEENDEDGDENEGKGKDESNSPVETRKRAKVVDDLE* 668
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7590266 7602481 - CsaV3_5G012330.1 Csa05g00936 529323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00936 667 MobiDBLite consensus disorder prediction 622 667 - -
Csa05g00936 667 SMART ring_2 163 201 IPR001841 -
Csa05g00936 667 SMART ring_2 534 590 IPR001841 -
Csa05g00936 667 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 513 639 IPR013083 -
Csa05g00936 667 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 21 641 IPR045134 -
Csa05g00936 667 Gene3D - 262 458 IPR036987 -
Csa05g00936 667 Pfam RING-type zinc-finger 534 588 IPR027370 -
Csa05g00936 667 CDD RING-HC 163 201 - -
Csa05g00936 667 SUPERFAMILY PUA domain-like 265 460 IPR015947 -
Csa05g00936 667 ProSiteProfiles Zinc finger RING-type profile. 534 590 IPR001841 -
Csa05g00936 667 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 80 IPR013083 -
Csa05g00936 667 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 230 IPR013083 -
Csa05g00936 667 SMART G9a_1 286 443 IPR003105 -
Csa05g00936 667 MobiDBLite consensus disorder prediction 493 512 - -
Csa05g00936 667 MobiDBLite consensus disorder prediction 644 667 - -
Csa05g00936 667 Coils Coil 615 635 - -
Csa05g00936 667 SUPERFAMILY RING/U-box 527 615 - -
Csa05g00936 667 Pfam Zinc finger, C3HC4 type (RING finger) 163 201 IPR018957 GO:0046872
Csa05g00936 667 SMART PHD_3 32 79 IPR001965 -
Csa05g00936 667 ProSitePatterns Zinc finger RING-type signature. 549 558 IPR017907 -
Csa05g00936 667 SUPERFAMILY FYVE/PHD zinc finger 25 85 IPR011011 -
Csa05g00936 667 MobiDBLite consensus disorder prediction 623 643 - -
Csa05g00936 667 Pfam SAD/SRA domain 294 442 IPR003105 -
Csa05g00936 667 ProSitePatterns Zinc finger PHD-type signature. 33 78 IPR019786 -
Csa05g00936 667 ProSiteProfiles Zinc finger PHD-type profile. 30 81 IPR019787 -
Csa05g00936 667 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 21 641 - -
Csa05g00936 667 ProSiteProfiles YDG domain profile. 291 439 IPR003105 -
Csa05g00936 667 MobiDBLite consensus disorder prediction 126 145 - -
Csa05g00936 667 ProSiteProfiles Zinc finger RING-type profile. 163 202 IPR001841 -
Csa05g00936 667 SUPERFAMILY RING/U-box 155 224 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02528 Csa-Chr3:23667869 Csa05g00936 Csa-Chr5:7590266 3.75E-06 dispersed
Csa04g02015 Csa-Chr4:20255367 Csa05g00936 Csa-Chr5:7590266 0 dispersed
Csa05g00936 Csa-Chr5:7590266 Csa03g00232 Csa-Chr3:1856413 4.55E-15 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00936 K10638 - csv:101219001 1341.64