Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00943 ATGGCTGCATCTTCTTCCTCAGTTCCACTTTTTGGAGTTCGAGAAGAAGGTCAGATGAGAGGTCAGCAGCCACCGCAACCACAACCGCCGCCGCCGTCAGCTCCCTCTAATTCATCCACTGCTCTTCCAACTCCTCCTCCCCAGAAGAAAAAGAGAAACCAACCAGGAACTCCAAATCCAGATGCAGAAGTGATAGCGTTAAGTCCAAAGACATTAATGGCAACAAACAGATTCATATGTGAAGTATGCAACAAAGGGTTTCAAAGAGAGCAAAATCTACAACTACATAGAAGAGGACATAATTTACCATGGAAATTAAAGCAGAAAAGCACAAAAGAACCAAAAAGAAAAGTGTATTTATGCCCAGAACCAACATGCGTTCACCATGACCCGTCAAGAGCACTTGGGGATTTAACAGGTATCAAGAAACACTATTCACGAAAGCACGGAGAAAAGAAGTGGAAGTGCGATAAATGCTCTAAACGCTACGCCGTTCAATCCGACTGGAAAGCTCATTCCAAAACCTGTGGCACTAGAGAATATCGTTGCGATTGTGGCACTCTCTTCTCCAGACGGGACAGTTTCATTACACATAGAGCGTTTTGTGATGCATTGGCACAAGAGAGTGCAAGACACCCTCCAAATTTAGGGACAGCCATTGGAAGCCATTTATATGGAGGTAATAGCAATGTGGGTTTGACATTATCACAAGTCCCTCAAATGTCTTCTCTTCAAGACCATTCCAACATCACCCAATCACCCCACGACGTCCTTCGTCTTGGCGGTGGTCGAACCGGGCAGTTCACTCATCTCCTCCCTCCTTCTATTGGCTCTTCCTTCCGACCCCCACCACAACAAGCAATGCCGTCGTCGAATGCAGCATTTTTCGGCCTATCGGACCAAACTAACCAAAATAGCTTCCATGAAGATCATCATCAAAGCCAATCCCAGCAAGGGTTATTTGGAAACAAGCCCTTTCATGGGCTAATGCAATTCCCTTCTGATATCCAAACCCATGCAAATAACAACAACAATTCTGCTTCAAATCTCTTCAATTTGAGCTTCATTTCAAATCCCACTGGTGATAATACTTCCAATATGAACAATAACAATGACACCAACACTAACAATAGCAACAGCAGTAGCAACAACAACAACAATCTTCCATCCTCTTTGTTAAACCAATTCAACGGAACGAACAATGGCAACAACGACGGTCCTGCGTCTAACATTTTCGCTGTTAACATAATGGGAGATCAAATCAATTCAGCTGCAGTCCCCTCGCTATACAGCAACACCGCCCCGGGAGGATGTAGTAGCGGTACTAGCGGAGGAGGAGCAATCCCGCATATGTCCGCAACAGCACTGCTCCAAAAAGCAGCACAACTAGGCTCAACAACGTCAAGTAGCAATACTACAGCGACATTGCTACGCACATTTGGAAGCTCCTCGACCTCAAGCGGTAAGGCATCAGATAGAACGCTGTTCCCACCGAGTTATGGCGGAGTAGTATTCGGTGAAAATGAGAGTAATCTCCAAGACCTGATGAACTCATTTGCAAACGCAAGCTCAGGGAGTGGGATGTTCGGGTCGTTTGGGGTGGAAAGTTTAGAGGATCCAACGAAGTTACAACAGAATTTAAGCACAGTGAGTATGGGAGGTGGGACAGATAGGTTAACAAGAGACTTCTTAGGGGTGGGACAAATCGTAAGAAGTATGAGCGGAGGTGGTGGCGGTGGCGGTTATACACAGAGAGAACATAAACAAGGAGGGCAAGGGATAGTTATGGAGGGTAATGAGAGCAATACGGCGCCGTCAAGCAATGCATTTGGTGGTGGAAATGGAAACTACCAGTGA 1857 45.83 MAASSSSVPLFGVREEGQMRGQQPPQPQPPPPSAPSNSSTALPTPPPQKKKRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARHPPNLGTAIGSHLYGGNSNVGLTLSQVPQMSSLQDHSNITQSPHDVLRLGGGRTGQFTHLLPPSIGSSFRPPPQQAMPSSNAAFFGLSDQTNQNSFHEDHHQSQSQQGLFGNKPFHGLMQFPSDIQTHANNNNNSASNLFNLSFISNPTGDNTSNMNNNNDTNTNNSNSSSNNNNNLPSSLLNQFNGTNNGNNDGPASNIFAVNIMGDQINSAAVPSLYSNTAPGGCSSGTSGGGAIPHMSATALLQKAAQLGSTTSSSNTTATLLRTFGSSSTSSGKASDRTLFPPSYGGVVFGENESNLQDLMNSFANASSGSGMFGSFGVESLEDPTKLQQNLSTVSMGGGTDRLTRDFLGVGQIVRSMSGGGGGGGYTQREHKQGGQGIVMEGNESNTAPSSNAFGGGNGNYQ* 619
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7821071 7826073 - CsaV3_5G012400.1 Csa05g00943 529330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00943 618 MobiDBLite consensus disorder prediction 361 404 - -
Csa05g00943 618 MobiDBLite consensus disorder prediction 23 53 - -
Csa05g00943 618 Gene3D Classic Zinc Finger 132 211 - -
Csa05g00943 618 MobiDBLite consensus disorder prediction 595 618 - -
Csa05g00943 618 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 581 - -
Csa05g00943 618 SUPERFAMILY beta-beta-alpha zinc fingers 77 174 IPR036236 -
Csa05g00943 618 Pfam Zinc-finger double-stranded RNA-binding 78 100 IPR022755 -
Csa05g00943 618 MobiDBLite consensus disorder prediction 594 618 - -
Csa05g00943 618 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 581 - -
Csa05g00943 618 MobiDBLite consensus disorder prediction 281 328 - -
Csa05g00943 618 MobiDBLite consensus disorder prediction 1 63 - -
Csa05g00943 618 Gene3D Classic Zinc Finger 57 126 - -
Csa05g00943 618 ProSiteProfiles Zinc finger C2H2 type domain profile. 78 100 IPR013087 -
Csa05g00943 618 MobiDBLite consensus disorder prediction 281 322 - -
Csa05g00943 618 ProSitePatterns Zinc finger C2H2 type domain signature. 80 100 IPR013087 -
Csa05g00943 618 SMART c2h2final6 119 149 IPR013087 -
Csa05g00943 618 SMART c2h2final6 154 174 IPR013087 -
Csa05g00943 618 SMART c2h2final6 78 100 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02543 Csa-Chr4:25110072 Csa05g00943 Csa-Chr5:7821071 5.46E-107 dispersed
Csa05g00943 Csa-Chr5:7821071 Csa06g03225 Csa-Chr6:27277593 1.29E-108 dispersed
Csa05g00943 Csa-Chr5:7821071 Csa03g03266 Csa-Chr3:29869314 1.06E-111 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31724 PF12171 zf-C2H2_jaz 3.80E-05 CL0361 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00943 K25870 - csv:101219959 1099.35