Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00950 ATGGACGCAGATAGCTCTTCAAAGACGGTTAAAACTAAGAACATATGTTCCAATGGCCTTATTCATCATTTGTTTTCTTGGACTTTAGAAGATATATTGTATGATGGTTTCTATAAAAACAAGGTGCAACATATTCCAGATTCGTTTGAATCAGTGCATCAATATCTTGGAACTTATCTCTTTCCTTTGTTAGAAGAAACTAGAGCAGAACTGTCTTTAAGTTTGAAGGCAATTCATAAAGCACCTTTTGCTCGACTGGTCTCTATTGAGGAGCCAAAATCTGGTGGCAAATTGTTACTAGATGTCAGTGTTGATTCTTGGAGAAATACAACAAAAAATGGTGGGAAGGAGTCTTACAGAACATTGCCTGGCGATATCTTTCTCATACTGGATGAAAAGCCGAATGCGGAAACTGTTATGAGTTTGCAATGCTCAACAAGAACCTGGGCTTTTGCTTGGGCTAAACAGAACCCTGAAAATGGATACTCTGCTCATCTGAAACTAAATTTCTCCAAAAACATCAGTGGTGAACATGACATGCAGAAAGAATTCTTTATTGTTTTTCTGATGAGTATCACAACCAACTTGAGAATATGGAACTCATTACACTCTTCTGAAGATGCAAAGATTATCGAGCACGTACTTAGCAAAAAATTAATGGGTGACGAAATCTGTGATAGATGCTCTTTGTATAATAATGCTGTCTGTGCTGAAAAATTGGGAACAAGCTTATCTTCTGTGTTGAATGATTCTCAAAGTGCAGCAGTGCTGTGTTCTATCTGCAAGACACTTTGTGACCATATGCCTTCCGTGGAGCTTATATGGGGTCCGCCTGGTACAGGAAAAACTAAAACTATTAGTTTCTTGTTGTGTAAAATTCTGGAAATGAATCAAAGGGTTCTTGCCTGTGCCCCAACAAATGTTGCTATTACAGAATTGGCAGCTAGAGTTGTACAGTTGCTAAGAGAATCATCCAAAGCAAAAGGTGTGTTATGCTCTTTAGGCGACATGCTCTTGTTTGGGAATAAGGATCGGCTGAAAGTTGGTTCTGAACTTGAAGAAATATATTTAGATTACCGTGTTGACAGGCTTGTAGAGTGTTTTGGACAAGCTGGTTGGAAATATCATACAACTTGTTTCATAAATCTTTTTGAAAGTAGCAATTCTGAGTATCTCATATTGTTGAAGTCTAATGTACAAACAAGCCCTTCATTCCTCGGATTCATAAGAGAAAAGTTCAAATCTACTTCTTCAGCACTCCGTGGATGCCTCAAAACCTTGATAACACACATTCCCAAACAATTCATTCTGGAGCATAATATTCAGAATATAGAGATCCTTCTAAACTTGATTGATTCATTTGGAATGCTTTTATCCCAGGACAATGTAACCTCTGAGCAAATGAAGATGCTTTTGTCAAGTCCAGAAGTATTTATTGATTTTCCAAATTCTTCTGTGGCAGAAACCATTTTATATTTCAGGAGCCAGTGCCTCTCAAGTTTAAGAACTCTTCAGGCTTCCCTGAATCAACTTCAGTTTCCAAGTACAGCGAATAGAGAATCCGTGAAGAAGTTCTGTTTCCAGAGGGCTTCTCTGATTCTTTGCACTGCTTCCAGTTCATTTCAACTGAACTTCATGAAAATGGACCCAGTGAACTTGTTAGTTATTGATGAAGCTGCACAGCTAAAGGAATGTGAATCAATAGTACCGTTACAACTTCCTGGTATAAAGCATGCTATTCTCATTGGTGATGAGTGCCAATTGCCGGCAATAGTTAGTAGCCAGGTTTGTGATGCAGTTGGATATGGTAGGAGTCTTTTCGAACGACTGAGTTTATTAGGACATTCAAAGCACTTGCTCAACACACAATACAGAATGCATCCATCAATAAGTTGCTTTCCAAATTCCAAATTTTACAGCAACCAAATTCTAGATGCTCCTCTTGTGATGGCTGAAGTACACAAGAAGTGTTATATTCCAAGTCCAATGTTTGGTCCGTATTCTTTCATAAATGTTTCTGTTGGGAAAGAAGAAGGGGATGATGATGGATATAGCAAGAAGAATACGGTTGAGGTAGCTGTAGTGATTAAAATAATTGAAAAGCTATACAAAGCCTGGAGGGGTGCCAAGACAAGACTCAACGTTGGTGTAATATCTTTCTATGCTGCACAAGTTTCAGAAATTCAGAGCAGACTTGCACATAAATATGAGAAGAGTCATAATTTCACTGTAAAAGTGAAGTCTGTGGATGGTTTTCAAGGTGGTGAGGAGGATGTGATCATATTAACCACTGTCAGATCCAACAGGAGAAAAAATATTGGGTTCATCTCTAGTTCACAGAGAATCAATGTTGCTTTGACAAGAGCTAGGCACTGTCTTTGGATTGTTGGAGATGCAACAACATTAGGCAATAGTAATTCTGAATGGGAAGCTGTAGTTTCTGATGCCAAGGATCGTCAGTGTTATTTTAATGCTGCGGAAGACAAAGACTTCGCAGATGCTATAATAGAGGTCAAGAAAGTGCTTCTTGAGCTTGATGATTTACTCAACAAGGATAGCGTACTGTTTACAATGGCTCAGTGGAAGGTTCTTCTAAGTGATTCTTTTAGGGCATCCTTTCAGAATGTGGTTTCAATCAACCAAAAGAAATTAATTATTGTCCTTTTGCTGAGGCTCTCATGTGGCTGGCGTCCAGGGACAGACTATGTCCCCAATCTCAAATGTTCTAACATTATAAAATGCTTTAAAGCTGAAGGTCTGTTCATCATATACTCATTGTATATTGAGAAGGATTTAAAGTACAAACAAATTCTTAAGATATGGGATATCAAACCTTTGACGGATGTAAAAGTACTTGTTGAGTGTCTTTCCGACATACATGAGCTGTATACTGATGACTTCCTGAATCTATGTAAAGCAAAGTCTCATAAAGGGGATCTTGAGCTTCCAATCACATGGAGTGCTTCTCCTGATATTGTTGTTTATAAAGATTACATGAAAGCTGAGCTAAATGCCATATTAAGTTTGCAAGGTGACAGTGATGACACCCAGGATATAACTTTGAAAAAAAAATTGCTGCAGATGAGGTTTCAATCTTTATCCTATCAAAAAGCAAAGCACTTGCTCTCGGGCCGTGACAGTAAAGAATTGGATCTCCCATGTCAAGTCGAAGATGTTGAATTAGAGATAATTTTGGTTCCTACCAATGCTTTCATAATGGGAAGGCCCGGTTCTGGGAAAACTGCAGCTATGACAGTAAAGCTTTTTATGAGAGAACAGCAGCAGTATATCCATCCTACGGGATGTAGTCTGGTTACACGAGAGAATGCAGAAGTATGTTATAGAAATGAGGGTGGTGAGGAATGCAAAAAGACAGAGAGAACTGTCCTGCGACAGCTGTTCATCACAGTCACTCTTAAACAGTGCCTCTATGTAAAAGAGCGCCTTGCATACTTGAAAAGAATTTCCAATGGTGGGAACGTTTTTAAAGAGACCCAAAATTTGTGTAAAGCTGATGTGCTCGATATGAATGATGTTCAAGATCTCTTGGATGTTCCAAATAGCTTTGATGGTATTCCAGCCAACTCATTTCCTCTAGTGATAACATTTAGAAAGTTTTTGATAATGCTTGATAGAACTGTGGGAGATTCATACTTTATTAGATTTCAGAAACAATGGAGACTTAGTGGTGGCAAGCCCAAAGATTCATTATCAAGAGCTGCCTATAATTTTATAGTATCAAAGGAAGTAACTGTTAAAAACTTTGCTTCATCGTACTGGTCCTACTTCGATAGCTGTCTAACCTACAAGCTTGATGCTGTTGTGGTTTTCAATGAAATCATTTCCCAGATAAAAGGTGGATTAGGAGCAAAGGATGCTCTTGATGGTAAACTTAGTAAGCTAGATTATACTCGACTTTCAAAGGGTCAGTCCACATTAAGCAGAAAGCAAAGAGAAAGAATTTATGATATATTTTTAGATTATGAAAAGATGAAAAACGCAAAAGGGGAATATGATTTGGCTGATCTAGTCATTGACCTTCATCGTCGATTGAAAGTTTTTCGGTATACAGGCGATCACATGGATTTTGTTTATGTGGATGAAGTACAAGCTCTTACTATGATGCAAATTACTCTTTTAAAATACCTGTGTAAAAATGTCAATTCAGGCTTTGTTTTTTCAAGTAATACAACTCAAACTATTGCCAAGGGTATTGACTTCAGGTTCCAGGACATAAGATTTTTGTTCTACAAGGAATTCATATCAGGAGTTAAAACTGATGAAAAAGGCATTGATGCAGGGTTAATAAAAATCCCGGACATTCTTCACATAAATCAGAATTGTCGTACACAACCCAAAATTCTCCAATTAGCTAATAGCGTTACAGATCTTCTTTTCCGCTTCTTTCCACGATGTATTGATATAGTGTGCCCTGAAACAAGTGAAATGAGTTCAACTGATTTTGAAACCCCAGTTCTTCTTGAAAGTAGGAAAGGCCAAAATATGATGATGGTTTTATTTGAAGAGGGGAGAAATATACCTGCAGACGCTCGTGGATATGGAGCAAAACAGGTCATTTTGGTTCGAGATGAGTGTGCCAGGGATGAGATCTCTAGTCTTGTGGGAAATCAAGCCATTATCGTTACAATTATGGAGTGTCAATGCATGGAATTTCAGGATGTTCTGTTGTACAAATTTTTCAACTCATCGCCTCTGGGAAATCAGTGGAGAGTCATATATCAATATATGATTGAGCAAGACATGCTTGAAATTGCTCCCGGTGGTTCTCCAAGCTTCAATCAGCCAGTACAACTGGACTTATGTTGGGAATTAAAGCTACTCCATATAGCACTTACACGTTCAAGGAGAAGATTATGGATTTATGAAGACAACCAGGAGTTTTCCAATCCGATCGTTGACTATTGGAAAAAACTGTGTTATGTTCAAGTAAAGACACTGGATTACTCAATCGTACAAACAATGAAGGTCCCAAGCACGAAAGAGGAGTGGAGCTCACTGGGGCTTGAGTTCTTTTCAGAGGGTGTTTATGGGGCAGCATCTTTGTGTTTTGAAAGGGCTGAAGACAGACGTAGAAGTGAATGGGCCAGGGCTGCTTCTTTTTGTGCAACTGCAAATCCTCAAATATCTCGTAATGCCCTTCGAGAAGCTGCTGAAATTTATATTTCTTTGGATCGTGCTGAGATTGCTGCCAAGTGCTACATTGAGTTAAAAGAATATAAAACAGCAGCTTATACATATTTAACAAAATGTGGGGAAGCAAGGTTAGAGGATGCTGGTGATTGTTATATGTTGGCTAAATGCTACAAATTAGCAGCCGTGGCATATTCAATGGGCAGATGTTTCTTGAAATTCTTTGATGTCTGCACTGCGGCAAATCTTTTCGACACGGGGTTGCAAGGGATCTGCAGCTGGAGGAAATATGATAATGTTGATCTCATTAAGAAATGCAAACATATCAAAGAGGCGTGGCATTTGTTTCTGTGGAAAGGTGCCCTTCACTATCACCAGCTTCAAAATTTTGGTTCCATGATGAGATTTGTCGAATCCTTCGACTCCATTGATGAAAAATATTTATTCCTCGGGACTTTGGGTCTCTCTGAGAATAAAATGTTGCAAGAGGAAGAACTAACCATATCCGAAAATGAAGGGTTTCATTCACCAGGGTTGCATCTTCAACCAAAGCTTGTATCAGTCTCAGTACACAAGGAAACATCTCAAAATGATACAAAGACTAAGGGTAAGATGAAAGTTGCTAATAACATATCAACAGCTAAAGGGTCTTCGCGTGGTTCAAAGTTTCAACCTAAACTCAAGTCAGTATGGAAGGAAACGACATTCCAAAATGATACCAAGTCAAAGGAAAGGATGAAAGTGGCTGATGACATGTTTTCACTAGGATTGCAGTTTCAATCTAAGCTTGAGTTCAAAACAGTAGCACAGATTGATACCACGATAAGGGGTAAGATGAAAGTTGCTGAAAACATGTCAACAACTAAAGGGTCTTCCCAAGGATTGAAGTTTCAATCTAAGATAAAGTCAGTATGGAAGGAAACAACATCCCAATATAATACAATGACAAAGGAGGTGGAACTGGCTGATAACTTGTCTACAGCTGAAGAGCCTTTGCAAGGATTGCAGTTTCAATGTAAGCTTGAGTTTGAAACAATATCACAAAATGATACGACGACAAGGGATAGTATGGAAGTTTCTGAGGACATGTCAATAGTAAATGGGTCTTCAAAAGAGTTGAAGTTTCAACCTAAGCTCAAGTCAATATGGAAGGAAACACAATCCCGAAATGGTACAAAGACAACGGATAAGATGAAACTGGCTAATAGCATTAGCATGTCTATAGCAAATGAGTCTTCACAAGGATTGCAGTTTAAATCCAAGCTCAAGACGAAAACAGTATCTAAAAATGATACGGAGAAAAAGGATAAGATCCAAGTTGCTGAAATCATGTCAACAAGTGAATGGTCTTCACATGGATTGCAGTTTCAATCAAATCAGGAGTCACTGTGCATGGAGAAAACATCTCAAAATGATTCGAAGATTGAGGATAATCTGACAGTTGCCCCTTTCATCTCATCCCCTAAAGACACATCATACAAGTTGCAATTTAAGCCAAAGTCTGTGTATGCCAAAGAGGTAATTGCAGCACAAAATGATCTGAAGATGGAGAAAGACGAAGTGAATATTGTAAACAAGGCAGAAGCTTCACAAAGGCTGCAGCAGCAATGTAATCAGAAGGTCAGAAATGCACATAAGGAAACAACAAGCTCGATTGATTCAAAAGCGAAGAAGGATAAGATGAAAAACTCTGTCAACTTGTCAGAATTTGGAGATTCATCACAACAACTGCAACAGCTGCAAATTGAACAGAAGAAGCTAAAAAACAAGAATGTGGATGGTGAGAAGGGTAAACAGAAAGTGACAGATCACAAGTTCATAGCCAAGCAGTACTGGAGAAAGGTAACCGAAAATGTAACAGCGACACCAGATCTTAAGTTTTCTCGTCTTCACTCCACGGTATAA 7056 38.51 MDADSSSKTVKTKNICSNGLIHHLFSWTLEDILYDGFYKNKVQHIPDSFESVHQYLGTYLFPLLEETRAELSLSLKAIHKAPFARLVSIEEPKSGGKLLLDVSVDSWRNTTKNGGKESYRTLPGDIFLILDEKPNAETVMSLQCSTRTWAFAWAKQNPENGYSAHLKLNFSKNISGEHDMQKEFFIVFLMSITTNLRIWNSLHSSEDAKIIEHVLSKKLMGDEICDRCSLYNNAVCAEKLGTSLSSVLNDSQSAAVLCSICKTLCDHMPSVELIWGPPGTGKTKTISFLLCKILEMNQRVLACAPTNVAITELAARVVQLLRESSKAKGVLCSLGDMLLFGNKDRLKVGSELEEIYLDYRVDRLVECFGQAGWKYHTTCFINLFESSNSEYLILLKSNVQTSPSFLGFIREKFKSTSSALRGCLKTLITHIPKQFILEHNIQNIEILLNLIDSFGMLLSQDNVTSEQMKMLLSSPEVFIDFPNSSVAETILYFRSQCLSSLRTLQASLNQLQFPSTANRESVKKFCFQRASLILCTASSSFQLNFMKMDPVNLLVIDEAAQLKECESIVPLQLPGIKHAILIGDECQLPAIVSSQVCDAVGYGRSLFERLSLLGHSKHLLNTQYRMHPSISCFPNSKFYSNQILDAPLVMAEVHKKCYIPSPMFGPYSFINVSVGKEEGDDDGYSKKNTVEVAVVIKIIEKLYKAWRGAKTRLNVGVISFYAAQVSEIQSRLAHKYEKSHNFTVKVKSVDGFQGGEEDVIILTTVRSNRRKNIGFISSSQRINVALTRARHCLWIVGDATTLGNSNSEWEAVVSDAKDRQCYFNAAEDKDFADAIIEVKKVLLELDDLLNKDSVLFTMAQWKVLLSDSFRASFQNVVSINQKKLIIVLLLRLSCGWRPGTDYVPNLKCSNIIKCFKAEGLFIIYSLYIEKDLKYKQILKIWDIKPLTDVKVLVECLSDIHELYTDDFLNLCKAKSHKGDLELPITWSASPDIVVYKDYMKAELNAILSLQGDSDDTQDITLKKKLLQMRFQSLSYQKAKHLLSGRDSKELDLPCQVEDVELEIILVPTNAFIMGRPGSGKTAAMTVKLFMREQQQYIHPTGCSLVTRENAEVCYRNEGGEECKKTERTVLRQLFITVTLKQCLYVKERLAYLKRISNGGNVFKETQNLCKADVLDMNDVQDLLDVPNSFDGIPANSFPLVITFRKFLIMLDRTVGDSYFIRFQKQWRLSGGKPKDSLSRAAYNFIVSKEVTVKNFASSYWSYFDSCLTYKLDAVVVFNEIISQIKGGLGAKDALDGKLSKLDYTRLSKGQSTLSRKQRERIYDIFLDYEKMKNAKGEYDLADLVIDLHRRLKVFRYTGDHMDFVYVDEVQALTMMQITLLKYLCKNVNSGFVFSSNTTQTIAKGIDFRFQDIRFLFYKEFISGVKTDEKGIDAGLIKIPDILHINQNCRTQPKILQLANSVTDLLFRFFPRCIDIVCPETSEMSSTDFETPVLLESRKGQNMMMVLFEEGRNIPADARGYGAKQVILVRDECARDEISSLVGNQAIIVTIMECQCMEFQDVLLYKFFNSSPLGNQWRVIYQYMIEQDMLEIAPGGSPSFNQPVQLDLCWELKLLHIALTRSRRRLWIYEDNQEFSNPIVDYWKKLCYVQVKTLDYSIVQTMKVPSTKEEWSSLGLEFFSEGVYGAASLCFERAEDRRRSEWARAASFCATANPQISRNALREAAEIYISLDRAEIAAKCYIELKEYKTAAYTYLTKCGEARLEDAGDCYMLAKCYKLAAVAYSMGRCFLKFFDVCTAANLFDTGLQGICSWRKYDNVDLIKKCKHIKEAWHLFLWKGALHYHQLQNFGSMMRFVESFDSIDEKYLFLGTLGLSENKMLQEEELTISENEGFHSPGLHLQPKLVSVSVHKETSQNDTKTKGKMKVANNISTAKGSSRGSKFQPKLKSVWKETTFQNDTKSKERMKVADDMFSLGLQFQSKLEFKTVAQIDTTIRGKMKVAENMSTTKGSSQGLKFQSKIKSVWKETTSQYNTMTKEVELADNLSTAEEPLQGLQFQCKLEFETISQNDTTTRDSMEVSEDMSIVNGSSKELKFQPKLKSIWKETQSRNGTKTTDKMKLANSISMSIANESSQGLQFKSKLKTKTVSKNDTEKKDKIQVAEIMSTSEWSSHGLQFQSNQESLCMEKTSQNDSKIEDNLTVAPFISSPKDTSYKLQFKPKSVYAKEVIAAQNDLKMEKDEVNIVNKAEASQRLQQQCNQKVRNAHKETTSSIDSKAKKDKMKNSVNLSEFGDSSQQLQQLQIEQKKLKNKNVDGEKGKQKVTDHKFIAKQYWRKVTENVTATPDLKFSRLHSTV* 2352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7971214 7992684 + CsaV3_5G012470.1 Csa05g00950 529337

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00950 2351 Gene3D - 1057 1416 IPR027417 -
Csa05g00950 2351 Gene3D - 176 623 IPR027417 -
Csa05g00950 2351 Coils Coil 2287 2307 - -
Csa05g00950 2351 Gene3D - 624 837 IPR027417 -
Csa05g00950 2351 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1067 1632 IPR027417 -
Csa05g00950 2351 Pfam AAA domain 602 799 IPR041679 -
Csa05g00950 2351 Pfam AAA domain 248 594 IPR041677 GO:0004386
Csa05g00950 2351 Pfam Domain of unknown function (DUF6469) 82 206 IPR045529 -
Csa05g00950 2351 PANTHER MAMMARY TURMOR VIRUS RECEPTOR HOMOLOG 1, 2 MTVR1, 2 612 1887 IPR039904 -
Csa05g00950 2351 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 246 812 IPR027417 -
Csa05g00950 2351 CDD SF1_C_Upf1 626 817 IPR041679 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00950 - - - csv:116403818 4492.57
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00950 Csa-Chr5:7971214 Csa05g00981 Csa-Chr5:8991242 8.25E-19 dispersed
Csa07g02274 Csa-Chr7:21176159 Csa05g00950 Csa-Chr5:7971214 1.54E-43 dispersed
Csa05g00950 Csa-Chr5:7971214 Csa05g00953 Csa-Chr5:8015214 0 proximal
Csa05g00950 Csa-Chr5:7971214 Csa05g00954 Csa-Chr5:8024570 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1085 . . . . . . Bma14g01590 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy10g00057 . . . Bda07g01444 . Bpe11g01611 . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00950 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008330 1 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 2 2 1 2 2 2 1 1 1 0 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00950 Csa_Chr05 FPKM 4.624694 4.471342 9.83072 10.397199 11.61263 11.009075 11.932395 7.709465 8.254045 10.00233