Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00952 ATGTCGCGGAAGGGTTTAATGGAACAAGACTTAAAGAAATTGGATGTAACAAAGCTCCATCCGCTTTCTCCAGAAGTTATATCTCGTCAAGCTACTATCAATATTGGTACTATTGGTCATGTGGCACATGGTAAGTCTACAGTTGTAAAGGCAATTTCAGGAGTCCAGACTGTACGTTTTAAGAATGAACTGGAGCGTAACATTACCATTAAGTTGGGGTATGCTAATGCGAAGATATACAAATGTGAAGATGACAAGTGCCCTCGGCCTGCATGCTACAAGGCATATGGAAGTGGAAAGGAAGACAGTCCTTTGTGTGATGTGCTTGGGTTTGAAAATTGCAGGATGAAACTACTGCGACATGTATCCTTTGTCGACTGCCCGGGTCACGATATTCTTATGGCTACCATGCTTAATGGAGCAGCCATTATGGATGGAGCACTACTTCTGATAGCTGCCAATGAAAGCTGCCCTCAACCTCAAACTTCTGAGCACCTTGCTGCTGTTGAAATTATGCGCCTTCAGCATATTATAATCCTCCAGAATAAAGTTGATCTTATTCAGGAAAATGTTGCAATCAATCAGCACGAAGCTATTCAAAAGTTCATTCAGGGAACAGTTGCTGATGGTGCACCAGTGGTACCAATTTCTGCTCAGCTGAAGTATAACATTGATGTCGTTTGCGAATATATAGTAAAAAAGATTCCAATTCCAGAAAGGAATTTCGTCTCACCTCCTAATATGATTGTGATTCGTTCATTTGATGTTAACAAACCCGGATTTGAAGTTGATGAGATCAAAGGAGGTGTAGCTGGTGGTAGCATATTACGGGGTGTTTTAAAGGTGAATCAATTTATTGAAGTTCGTCCTGGGATTGTTGTTAAGGATGAAAGTGGTAACATAAAGTGCACCCCAATATACTCGAGGATTGTTTCTTTGTATGCTGAGCAAAATGAGCTGCAATTTGCAGTCCCTGGAGGTCTTATTGGGGTTGGTACAACCATGGACCCCACTTTGACTCGTGCTGACAGATTGGTAGGTCAGGTTCTTGGGGAAGTTGGATCACTTCCTGATGTTTATGTCGAGCTAGAGGTAAACTTTTTCCTTTTACGGCGGCTCCTAGGTGTGAGGACAAAAGGATCAGAAAGACAGGGAAAAGTATCAAAACTAGCCAAGGGGGAGATTCTAATGTTGAACATAGGATCCATGTCTACGGGAGCTAGAGTAGTTGCAGTGAAGAACGATTTAGCAAAGTTGCAGCTTACATCTCCTGTTTGCACCAGCAAGGGGGAGAAGATCGCTCTAAGTCGTCGTGTTGAGAAGCACTGGCGTCTTATTGGCTGGGGTCAAATTCAAGCTGGATCTACTCTGGATGTCCCTCCCTGCCCCATTTGA 1395 43.08 MSRKGLMEQDLKKLDVTKLHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDKCPRPACYKAYGSGKEDSPLCDVLGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIQKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPIPERNFVSPPNMIVIRSFDVNKPGFEVDEIKGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLYAEQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVGSLPDVYVELEVNFFLLRRLLGVRTKGSERQGKVSKLAKGEILMLNIGSMSTGARVVAVKNDLAKLQLTSPVCTSKGEKIALSRRVEKHWRLIGWGQIQAGSTLDVPPCPI* 465
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8001716 8007289 - CsaV3_5G012490.1 Csa05g00952 529339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00952 464 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 30 239 IPR000795 GO:0003924|GO:0005525
Csa05g00952 464 CDD eIF2_gamma_II 241 354 IPR044127 GO:0000049
Csa05g00952 464 Pfam Elongation factor Tu GTP binding domain 32 236 IPR000795 GO:0003924|GO:0005525
Csa05g00952 464 Pfam Initiation factor eIF2 gamma, C terminal 362 451 IPR015256 -
Csa05g00952 464 Gene3D Translation factors 357 456 - -
Csa05g00952 464 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 3 1 463 - -
Csa05g00952 464 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 242 IPR027417 -
Csa05g00952 464 Gene3D Translation factors 242 356 - -
Csa05g00952 464 PRINTS GTP-binding elongation factor signature 34 47 IPR000795 GO:0003924|GO:0005525
Csa05g00952 464 PRINTS GTP-binding elongation factor signature 123 133 IPR000795 GO:0003924|GO:0005525
Csa05g00952 464 PRINTS GTP-binding elongation factor signature 139 150 IPR000795 GO:0003924|GO:0005525
Csa05g00952 464 PRINTS GTP-binding elongation factor signature 177 186 IPR000795 GO:0003924|GO:0005525
Csa05g00952 464 CDD eIF2_gamma 33 240 IPR044128 GO:0005525
Csa05g00952 464 Gene3D - 30 240 IPR027417 -
Csa05g00952 464 Pfam Elongation factor Tu domain 2 268 350 IPR004161 GO:0005525
Csa05g00952 464 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 3 FAMILY MEMBER 1 463 - -
Csa05g00952 464 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 355 452 IPR009001 -
Csa05g00952 464 CDD eIF2_gamma_III 357 451 IPR015256 -
Csa05g00952 464 SUPERFAMILY Translation proteins 240 354 IPR009000 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00952 Csa-Chr5:8001716 Csa07g01766 Csa-Chr7:18054132 2.57E-15 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00952 K03242 - csv:116403970 918.687