Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00953 ATGCATGAAAAGGAGGAGGAAGAGATGGAGACCCATTTGGGGTTTACTGATATTTTGTTTTCTTGGTCACTTGAAGATATTTTCAATGAAAATTTGTACCAAGACAAGATTGAAAAGATTCCGGATACTTTTGGCTCTGTTGAGAGTTATCTTGGGTCATATATCAACCCTTTACTTGAGGAGACTAGAGCTCAGCTTTGTTCTTGCATGGACATGGATGTTATATTGGCTGCACCTTGTGCTGAAGTGAGTTATTTGGTAGAGTGTAAGCCATATAATACCGGGTTATATGACTGCAAGGTTGATGGATGGAGGAACAAATTTGACCGAATTGGGAAGGAGCCATACAAAGTTTTTCCTGGAGATGTATTTATTTTGGCGGATGTCAAACCTGAACTTCCTTCAGATTTGCAAAGAATGGGAAAATCTTGGAGTTTAGCCATTGTTCATAAAATGCCAGAAGATGATCTCTCCTCCACTTCATTTAAAGTAAAAGTACAGAACTCAGAGATGATTGAGAAATCGATGTTTGTGGTTTTTTTGTTCAATATACTCCCGAGCAAAAGAATATGGAACGCATTACACATGAATGTGAATTCAGAGATTATCAGGAAAATTCTATGCCCCAATTCATTGGATGCTGAAGATTTTGACACGTCCAGTCATCTGTATCAAAATTTGAATGCCAGTTTTCTCTCATCATTAAATGCCTCTCAAGAGAGAGCCGTTTTGTCATCTCTTTACAAAACAAATTTTGAGCATGAATCTAATGTTGACCTTGTATGGGGTCCACCAGGGACAGGGAAGACGAAGACAGTTAGTGTGTTGCTCTTAAATCTAATGCAGAACAGATGCAAAACTATCATAGTCGCTCCAACAAATGTTGCCATCGTGGAAGTTGCCACCCGAGTTCTTAATTTGGTCAAGGAGTTGCATGAAATAGAATATGGACCAGATTATTTATATTATTCTTTTGGAGACATTCTTTTATTTGGAAATAAGGAGAGGCTCAAACTTGGCTCAAATGTTGAAGAAATGTATTTGGATTATCGAGTTCAAAAACTTCTGGAGTGCTTTGATCCCATCACTGGTTGGAGGCATTGCTTTGGATCCATGACTGATCTTCTTGGAGATTGTGTTTCTCAGTACAATATTTTCTTGGAAAATGAACTTAAACAAAAATGCCTTGATGATAAAGAAACTGATGAAAAAGGCTGCATAAGTAAAGATAAAGATGATAAGGTGGCTAGTAAATCTTTTCTTGAATTTGCAAGAGAGAGGTTTATGTCTGTTGCATCTCAACTCCGAATGTGTCTTGCAATCTTCAGTACTCATTTACCTAGAAAATGCATTTTGAAGCTTGGTTTGAAGGACTTGGTTTCCCTTTCTAAATCATTAGATTGTTTTGAGGATTTACTATTTCAACAATCTGTTGTTTCTAATGTACTTGAGGATCTTTTTAAATGTTCTGTTGTAAGTGAAGGTTTCCCTACAACATGCACCGATTTTGCTTGCTTGTTTGACATGGCAAGAAGTGGTTGCCTATCCGGTTTGAAATCTCTTCATTGTTCCTTAACAGCACTTAAGCTTCCAAGGGCCATAAACAGATTATCGATCGAGCACTTCTGCTTTCAGAATGCTTCCTTGGTCTTTTCCACTGCTTCAAGCTCATATAGGTTACATTATAAGTATAGGTTAGATTCTAAGTCGATGCCTTCTTTCAAAGTATTAGTAATTGATGAAGCAGCACAGTTGAAAGAGTGTGAGTCAATCATTGCATTTCAAATTCCAGATTTTAAGCATGCTGTACTCATAGGTGATGAGTGCCAATTACCTGCAATGGTTAAAAGCAAGCTTGCTGACAATGCTGGATTTGGAAGAAGTTTATTTGCACGGTATTGCTCTTTGGGCCACCCGAGACACCTTCTCAATGTGCAGTACAGAATGCACCCATCCATTAGTTTCTTTCCAAATTCGAAATTCTATTTTAGCCAGATCTTGGATGGACCTAATGTTCAAAGTTCGAACTATCAGAAGAACTATCTTTTGGGATCTATGTTTGGACCCTATTCTTTCATAAACATAAAGTATGGAAAAGAAGAGAAAGATGATATTGGACACAGTCGAAAGAATATGATCGAGGTGGCTGTTGCTTTGAAAATTGTGCAAAGTTTGTACAAGGCATGGAAAAACTCAAGACGAAAGCTCAGCATTGGTATTATCTCCCCGTATTCTGCTCAAGTAGCAACTATTCGAGATAAAATTGGACACAGGTATGATAAGCTTGATGGCTTTTGGGTGAAGGTGAAATCTGTTGATGGCTTTCAAGGTGGTGAGGAAGACATAATCATTATCTCAACCGTTAGATCAAATAGAGGTTCTTCTGTTGGATTCTTATCTTGTGATCAAAGGACAAATGTTGCTCTTACAAGAGCTAGATATTGCCTGTGGATTCTAGGGAATGATAAAACATTGTCAAATAGTGAGTCTTCTTGGGCTCATTTGGTCTGCGATGCTAAGGATCGTGGCTGTTTCTTCAACGCTGATGATGATGAGAACCTAGCCAAAGCAATAGTGGATGTTAAGAAAGAGTTCAACCAACTTGACGATTTATTGAAAGGAGATAGTATTCTTTTCAGAAATGCAAGATGGAAGGTTCTATTCAGCGATAGGTTTTTGAAATCATTCAAGAAATTGTCAGCAGTTGAGATGAAGAAAAAAGTTCTGAATCTTCTACTGAAACTTTCCAGTGGTTGGAGGCCAAAAACCAGAGATTTAAATTTGGTATGTGGAAGTTCAACGAGAATTTTGAAGAAAATCAAGGTTGAGCGCATCTACGTTATTTGTTCAATTGATATAGTAAAAGAGTCGGCGTACATGCAAGTTTTGAGGATTTGGGATGTCTTACCATTGGAGGATATTTCAAAATTGGTCAAACATCTTGACAGTATATTCAGCTCATACACTGATGAATACGTCAATCTTTGTCAAGAAATATGCTATGATGGGGATTTTTTGGAAGTTCCCAAAACTTGGGCATTCATGTCAGAGCTTGTAAGGTACAAGAGTCATGTTGACAATTCAAATGAGGACAACTTACAAGGTGCTGCTTATGATGGCAGAAGTTATGTTGAGAATTCAAAGGTCAAAGACAGCTTGTTACTGATGAAATTTTACTCCTTATCATTTGGTGTGGTGAGCCATTTGCTTTCGGATAGAGATGGCATTGAGTTGGACCTTCCATTTGAAGTAACAGAAGAAGAACTAGATATAATTCTTTATCCCAGAAGCACTTTTATCCTTGGACGGTCTGGAACTGGTAAAACAACTGTATTGACCATGAAGTTATATCAGAAGGAAAAGTTGCATTATTTGGTTACAGGATCCTATGGAACTGAGGATGGTGTGAGTTCAGAAGCTGGTCAAAAAAGTGAAATTTCAGAGATTCCAGCAGCGGAAAATGGAGCTGTTTTGCGGCAGCTTTTCCTGACAGTTAGTCCAAAACTTTGTTATGCTGTTAGACAGCACGTGTCTCATTTGAAAAGGTAG 3549 37.93 MHEKEEEEMETHLGFTDILFSWSLEDIFNENLYQDKIEKIPDTFGSVESYLGSYINPLLEETRAQLCSCMDMDVILAAPCAEVSYLVECKPYNTGLYDCKVDGWRNKFDRIGKEPYKVFPGDVFILADVKPELPSDLQRMGKSWSLAIVHKMPEDDLSSTSFKVKVQNSEMIEKSMFVVFLFNILPSKRIWNALHMNVNSEIIRKILCPNSLDAEDFDTSSHLYQNLNASFLSSLNASQERAVLSSLYKTNFEHESNVDLVWGPPGTGKTKTVSVLLLNLMQNRCKTIIVAPTNVAIVEVATRVLNLVKELHEIEYGPDYLYYSFGDILLFGNKERLKLGSNVEEMYLDYRVQKLLECFDPITGWRHCFGSMTDLLGDCVSQYNIFLENELKQKCLDDKETDEKGCISKDKDDKVASKSFLEFARERFMSVASQLRMCLAIFSTHLPRKCILKLGLKDLVSLSKSLDCFEDLLFQQSVVSNVLEDLFKCSVVSEGFPTTCTDFACLFDMARSGCLSGLKSLHCSLTALKLPRAINRLSIEHFCFQNASLVFSTASSSYRLHYKYRLDSKSMPSFKVLVIDEAAQLKECESIIAFQIPDFKHAVLIGDECQLPAMVKSKLADNAGFGRSLFARYCSLGHPRHLLNVQYRMHPSISFFPNSKFYFSQILDGPNVQSSNYQKNYLLGSMFGPYSFINIKYGKEEKDDIGHSRKNMIEVAVALKIVQSLYKAWKNSRRKLSIGIISPYSAQVATIRDKIGHRYDKLDGFWVKVKSVDGFQGGEEDIIIISTVRSNRGSSVGFLSCDQRTNVALTRARYCLWILGNDKTLSNSESSWAHLVCDAKDRGCFFNADDDENLAKAIVDVKKEFNQLDDLLKGDSILFRNARWKVLFSDRFLKSFKKLSAVEMKKKVLNLLLKLSSGWRPKTRDLNLVCGSSTRILKKIKVERIYVICSIDIVKESAYMQVLRIWDVLPLEDISKLVKHLDSIFSSYTDEYVNLCQEICYDGDFLEVPKTWAFMSELVRYKSHVDNSNEDNLQGAAYDGRSYVENSKVKDSLLLMKFYSLSFGVVSHLLSDRDGIELDLPFEVTEEELDIILYPRSTFILGRSGTGKTTVLTMKLYQKEKLHYLVTGSYGTEDGVSSEAGQKSEISEIPAAENGAVLRQLFLTVSPKLCYAVRQHVSHLKR* 1183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8015214 8021268 + CsaV3_5G012500.1 Csa05g00953 529340

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00953 1182 Pfam Domain of unknown function (DUF6469) 79 199 IPR045529 -
Csa05g00953 1182 Pfam AAA domain 626 822 IPR041679 -
Csa05g00953 1182 Gene3D - 647 861 IPR027417 -
Csa05g00953 1182 CDD SF1_C_Upf1 649 840 IPR041679 -
Csa05g00953 1182 PANTHER OS04G0582700 PROTEIN 5 1116 - -
Csa05g00953 1182 Pfam AAA domain 235 388 IPR041677 GO:0004386
Csa05g00953 1182 Pfam AAA domain 538 618 IPR041677 GO:0004386
Csa05g00953 1182 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 230 833 IPR027417 -
Csa05g00953 1182 PANTHER DNA2/NAM7 HELICASE FAMILY 5 1116 IPR045055 -
Csa05g00953 1182 Gene3D - 161 646 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00953 - - - csv:105435477 2329.67
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00953 Csa-Chr5:8015214 Csa05g00981 Csa-Chr5:8991242 0 dispersed
Csa05g00950 Csa-Chr5:7971214 Csa05g00953 Csa-Chr5:8015214 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1083 . . . . . . . . . . . . . . . . . Bhi07g00157 . . Lac13g1696 . . . . . . . . . . Cone13ag0671 Cone19ag0665 . . . . Chy10g00088 Cme10g01138 . . Bda07g01445 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00953 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003082 5 0 2 1 1 1 2 1 1 0 1 1 3 1 1 2 2 2 1 1 2 2 4 4 2 1 0 4 1 2 51
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00953 Csa_Chr05 FPKM 6.803964 6.836068 3.062038 2.736196 14.376456 13.873387 13.185198 0.66875 0.408261 0.709056