Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00958 ATGGTAGGAGGCGGGCCTCAAGTTCTTGAACAACCACCGCAGTCTTTGCCTCAATCCACATCTGCTGCTGAAGAGGAGGCTATTAAGAGGAATACAGACTGTGTTTACTTTCTTGCTTCTCCTTTGACTTGTAAAAAGGGGAGTGAATGTGAGTATCGTCACAGTGAATATGCCCGGGTCAATCCTAGGGATTGCTGGTTCTGGTTAAATGGTAACTGCTTGAATCCAAAATGTTCATTCAGACATCCACCTTTGGATGGCTTGGTAGGAACTCCTCATTCAACAACTCCGAGTTCTCAGATTCCTTCTCAAACTGCAGCAATTCCCTCTACTCCTGTCAACTCGAGTAAACAAGCAGTCCCCTGCATTTTTTTCCAGAAGGGTCTATGTCTGAAAGGAGATCGATGTGCATTCTTGCATGGACCTCCTTCAGTTCAAACAAACAAAGTGCCTCAGATGGGAGCAAATGCCCAAGCTGGCGAGCCACCAAGTGTCAAGAAAGTTTCTGGTGGTACCCAAAGGAGCAGCCAAGAACAGAAGATTCCTCAAGCTAATTTTTTGAAGTCAATTAGTGGTTCATCTGTTAAAATTGCAACGAAAGATGAAACTGTGCCGTCAAAGATTGGAAAACTCAATGAGAAGAGCATACCACCTGCAGAAATGGCTGATGGTGGTTCAAGGTACAAGACTACAAATGCTCTTCCAACTATAAATGAGTGTTCACTAAGTAGAGCCAATCGACTGCAACAGAGTCATGTAATAGATGATCATGGATTACAGAATGGTAAGGATGCTGATGAGTTTTTGAAGGAGTCGTCTCCAGGTTTTGATGTTCTTGTCGATGATGAGCTTAGAGGCTCTGGTTATTATGGCAGTGAAGAACAGTATGGGAGGTCAAGAGGTCACGAGGGAGGAAATATGACTTCTATGAATGATTATGACATCAATCATTCTGCTGATTATAAAATGATGGGTGATGTTGATCATGATGTTTATAATGATGTAACAGACTATGACTACGAAAGTAGGCAAGGGGGGCAGTATGGTTGGGACCATCGTAGGACCTCGTCTGATAAGCTGTCTTTGAGCTCTGCCCAGATGGAAAGAAGGATCTTCCCGAAATCTAACAGTCCAGAACATGTTCAGAATGTGGATTTACGTCACCGTTTAAACAAGCAGAGAAGGGGAAATGGTTTGAGATCTGTGATCAATAATGAAAATGCTGCTAGTCGCCCTGAAGAAAGGAATTATCGCTCTTCTAGGAGAGATTCTCACTCCTCTCAAGAAAGCACTGTGAGTAACCGTCTCCGAGGTAGGATAAAGCTTCCAAGGATACCATCACCAGTTAGGAGTAGTGATATACGGCCAGAAAGAGATTTGAACCGGGGAAGACCCTGGGGAAGATCGTCACCAGGGAGGTCACAGTCCTTGTCTAATCAGGGAAGCAATAGAGATGAAATAAAAGGCAGACTGGAAGAAGATTATAACAATGAGCGTAGAACCTTTAATGGTTTTAATTCTAGAAGAGAGAGAACGGATGGAACATCTGACTTTGCTGCTCCAAAAAGTCTGGCTGAGCTGAAAGGCGACAAGCACATTGTTAGCAAGGAGCAGCAAACCCTTGGCAAAAGAAAAGGCTTCGATATTGATCAATCAGGAGGCGAACTGTCGTTTGAAGGACCAAAGTCTCTCAGTGAGATTCTAAAAAGGAAGAGACAAGTTAAAGCCGCTGTTGATCTTCCTATAAATAATGCTGAAAGAGACAACAGTGAAAGATCAATGGAACGCTCCACTACTCACCAGTTGAAGCAAAGTGTTCTATCATCAACAGGCAAGGACGAAACAAATAGCCTTGACGGAGTCAAATCTGCTCCAGCTGAAACTTTTGTGCAAGAGGAAGAAAATATTGACGTACCTCATCGCCGTTCTTCTCAGCCTATGCATTCGGCCGATGACCACGGGATTGAAGCTTATGATGAAGGATTGGTGGAAGAGGACCAAGAGTATGAAGGAGATGATCAAAGAGATGATGGCGAATATGAATACGAGCAAGTGGATGACGGGGAATACACATACGAGGAGGGCGATAACATAGATCCTGAAGAAGAGTACATGGATGACGAAGATGGTGATGATTTTGCCAAGAAGATTGGCGTCATGTCATGA 2166 43.72 MVGGGPQVLEQPPQSLPQSTSAAEEEAIKRNTDCVYFLASPLTCKKGSECEYRHSEYARVNPRDCWFWLNGNCLNPKCSFRHPPLDGLVGTPHSTTPSSQIPSQTAAIPSTPVNSSKQAVPCIFFQKGLCLKGDRCAFLHGPPSVQTNKVPQMGANAQAGEPPSVKKVSGGTQRSSQEQKIPQANFLKSISGSSVKIATKDETVPSKIGKLNEKSIPPAEMADGGSRYKTTNALPTINECSLSRANRLQQSHVIDDHGLQNGKDADEFLKESSPGFDVLVDDELRGSGYYGSEEQYGRSRGHEGGNMTSMNDYDINHSADYKMMGDVDHDVYNDVTDYDYESRQGGQYGWDHRRTSSDKLSLSSAQMERRIFPKSNSPEHVQNVDLRHRLNKQRRGNGLRSVINNENAASRPEERNYRSSRRDSHSSQESTVSNRLRGRIKLPRIPSPVRSSDIRPERDLNRGRPWGRSSPGRSQSLSNQGSNRDEIKGRLEEDYNNERRTFNGFNSRRERTDGTSDFAAPKSLAELKGDKHIVSKEQQTLGKRKGFDIDQSGGELSFEGPKSLSEILKRKRQVKAAVDLPINNAERDNSERSMERSTTHQLKQSVLSSTGKDETNSLDGVKSAPAETFVQEEENIDVPHRRSSQPMHSADDHGIEAYDEGLVEEDQEYEGDDQRDDGEYEYEQVDDGEYTYEEGDNIDPEEEYMDDEDGDDFAKKIGVMS* 722
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8061089 8065304 - CsaV3_5G012550.1 Csa05g00958 529345

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00958 721 MobiDBLite consensus disorder prediction 91 114 - -
Csa05g00958 721 SUPERFAMILY CCCH zinc finger 117 141 IPR036855 GO:0046872
Csa05g00958 721 MobiDBLite consensus disorder prediction 411 425 - -
Csa05g00958 721 MobiDBLite consensus disorder prediction 584 721 - -
Csa05g00958 721 MobiDBLite consensus disorder prediction 387 524 - -
Csa05g00958 721 MobiDBLite consensus disorder prediction 633 657 - -
Csa05g00958 721 MobiDBLite consensus disorder prediction 599 617 - -
Csa05g00958 721 MobiDBLite consensus disorder prediction 485 516 - -
Csa05g00958 721 ProSiteProfiles Zinc finger C3H1-type profile. 28 57 IPR000571 GO:0046872
Csa05g00958 721 ProSiteProfiles Zinc finger C3H1-type profile. 116 143 IPR000571 GO:0046872
Csa05g00958 721 SMART c3hfinal6 61 84 IPR000571 GO:0046872
Csa05g00958 721 SMART c3hfinal6 29 56 IPR000571 GO:0046872
Csa05g00958 721 SMART c3hfinal6 116 142 IPR000571 GO:0046872
Csa05g00958 721 MobiDBLite consensus disorder prediction 658 709 - -
Csa05g00958 721 MobiDBLite consensus disorder prediction 1 24 - -
Csa05g00958 721 Gene3D - 112 186 - -
Csa05g00958 721 ProSiteProfiles Zinc finger C3H1-type profile. 59 85 IPR000571 GO:0046872
Csa05g00958 721 PANTHER ZINC FINGER CCCH-TYPE-CONTAINING 11A 15 721 - -
Csa05g00958 721 MobiDBLite consensus disorder prediction 168 183 - -
Csa05g00958 721 MobiDBLite consensus disorder prediction 468 484 - -
Csa05g00958 721 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 15 721 - -
Csa05g00958 721 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 120 142 IPR000571 GO:0046872
Csa05g00958 721 Gene3D - 18 85 - -
Csa05g00958 721 Pfam Zinc-finger containing family 29 84 IPR041686 -
Csa05g00958 721 MobiDBLite consensus disorder prediction 154 183 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00958 - - - csv:116403891 1434.08
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1079 . . . . . . . . Cmo04g01052 . Cma04g00976 . Car04g00917 . . . . Bhi07g00087 . . . . . . . . . . . . . . . . . . . . Cme10g01362 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00958 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012053 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 1 1 1 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31725 PF15663 zf-CCCH_3 1.50E-11 CL0537 Csa TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00958 Csa_Chr05 FPKM 12.64973 12.575044 14.352596 13.329606 13.987309 11.219506 13.114175 15.753516 16.469833 18.681253