Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00962 ATGGACTACGAGAGGATTCTCAAGCCTCAGATCGATGAGGCGGGCTGTAGCGCATCTGATATTTGCAAAGATGTGGATGTGGTCAGTGTTCTTCCAGAGTGCTCGACTTCAAAAAAAGCTGATTTACTGGTTTCTGAGATGGTTAGTGAGCATAGATTGAAGGATAATGCTTATAATTCACGACTTAGGATGCAAGACGAGCCTTCTTTTGATTATGACAGTGGGCAGGATGGTTCAACTCTGCTCACTTCAGCCTTTGAGTTCCAGAAGTCAGAGAGGTCCGCACGAGTTCCCCTGGGACCCTTCTCTAAGCCAGCACCATCCAAATGGGATGATGCTCAGAAGTGGATTGCTAGCCCTACTTCAAATAGACCCAAAACAGGGCAATCTCAGACACAAGGTGGACATCTTTTTGGATCACGAAAACTAGGTATTGGTCTTGGGAGTCGTCAACCATCTTTGAAGGTTGTGGTTGAAGTTCCAGATCAGAAAGTGACTGCTTTTGAGGAACCGGATACAAAGCAGATTGATAGTCACGAAGCTAACATTGGAAATGTTGCTCAGAAGTTTGTTTCTTGGGATGCAAATCCATGCGCAGTAGCAGATTCAAATGGCAAGCCTGTGTTGATGATTGAGAGCTCTGTTGGAGAGTCAGCAATTAGTCTCAGCCAACATGATTCATCTCTGGCCATTCAGACTTCAACTACATTTATTCCTCCTCCCACAACCGCTCGTTCTGTCTCAATGAGAGATATGGGTACAGAGATGACACCTATAGCAAGTCAAGAACCTTCCAGGACTGGAACTCCTGTGAGAGCAACAACACCAATGCGTAGTCCCACTTCTTCAGTACCATCAACTCCTGGTAGAGCAACTTCATCTCCGACCGCTGCCCCTAATGACCGTGTAGATACTAACAAAGAGTTATCTGAAAAGGAGATACAGTTAAAAACTAGAAGAGAGATTGTGGTCCTCGGTACGCAATTAGGGAAACTGAACATTGCTGCATGGGCTAGCAAGGAAGAGGAAGAAAAAGATGCATCGACATCACTTAAAACTGTTGCAACCGAACAACCAACTAAAAGTGTGATAGAAACACGAGCAGCAGCATGGGAGGAGGCTGAAAAAGCCAAGTATATGGCTAGGTTCAAACGTGAAGAGATGAAGATTCAAGCATGGGAAAATCATCAGAAAGCAAAAACAGAAGCTGAAATGAGGAGAGTTGAGGTGAAAATAGAAAGAATGAGAGGACAAGCACATGATAGGCTTACAAACAAACTAGCAGCAGTGAGGCACAAAGCTGAAGAAAAGCTAGCAGCAGCGGAAGCGAAGAGAAACCGCCAAGCTGCAATAGCTGAACAACAAGCAGATCATATTCGCCAAACTGGTCGTATTCCTTCTTTATTTTCTTGCTTCTATTGTTGCTCTTGA 1431 44.51 MDYERILKPQIDEAGCSASDICKDVDVVSVLPECSTSKKADLLVSEMVSEHRLKDNAYNSRLRMQDEPSFDYDSGQDGSTLLTSAFEFQKSERSARVPLGPFSKPAPSKWDDAQKWIASPTSNRPKTGQSQTQGGHLFGSRKLGIGLGSRQPSLKVVVEVPDQKVTAFEEPDTKQIDSHEANIGNVAQKFVSWDANPCAVADSNGKPVLMIESSVGESAISLSQHDSSLAIQTSTTFIPPPTTARSVSMRDMGTEMTPIASQEPSRTGTPVRATTPMRSPTSSVPSTPGRATSSPTAAPNDRVDTNKELSEKEIQLKTRREIVVLGTQLGKLNIAAWASKEEEEKDASTSLKTVATEQPTKSVIETRAAAWEEAEKAKYMARFKREEMKIQAWENHQKAKTEAEMRRVEVKIERMRGQAHDRLTNKLAAVRHKAEEKLAAAEAKRNRQAAIAEQQADHIRQTGRIPSLFSCFYCCS* 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8113279 8116836 - CsaV3_5G012590.1 Csa05g00962 529349

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00962 476 MobiDBLite consensus disorder prediction 258 303 - -
Csa05g00962 476 Pfam Remorin, C-terminal region 364 467 IPR005516 -
Csa05g00962 476 PANTHER OS02G0116800 PROTEIN 11 472 - -
Csa05g00962 476 MobiDBLite consensus disorder prediction 258 311 - -
Csa05g00962 476 MobiDBLite consensus disorder prediction 118 137 - -
Csa05g00962 476 PANTHER OS02G0116800 PROTEIN 11 472 - -
Csa05g00962 476 Coils Coil 398 418 - -
Csa05g00962 476 MobiDBLite consensus disorder prediction 118 142 - -
Csa05g00962 476 Coils Coil 424 453 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00962 - - - csv:116404064 907.901
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02794 Csa-Chr3:26792773 Csa05g00962 Csa-Chr5:8113279 6.34E-18 dispersed
Csa05g00962 Csa-Chr5:8113279 Csa05g00974 Csa-Chr5:8866415 0 dispersed
Csa05g00962 Csa-Chr5:8113279 Csa04g02412 Csa-Chr4:24356732 9.61E-19 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1078 . . . . . . Bma14g01623 Bma15g00051 . . . . . . . . . Bhi07g00089 . . . . . . . . . . . . . Cone13ag0667 Cone19ag0663 . . . . . Cme10g01363 . . . . Bpe11g01616 . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00962 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009661 2 1 2 3 1 1 1 0 1 1 1 1 0 1 1 0 1 2 0 1 2 1 1 1 1 0 0 1 4 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00962 Csa_Chr05 FPKM 0.174377 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0