Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00971 TTCATCTTTTCTCTTCTTTCATTATATCATCATCTCAATACGCACGCTTCTTTCTTTCAGGATTTCATCAAAATGTCAATGCCTCCCCTACTTGTTCTTGCATTCACCTTCTTGCTTTTCGGTTTAGCATGTGATGCTCAACTTTCCTCTTCCTTTTACGACCAAACTTGTCCTACTGCACTTACAACTATTAGAACTGTCATTCGACAAGCCATCTCCCAAGAGCGCCGTATGGCTGCATCTCTCATTCGCCTCCATTTCCACGATTGTTTTGTTCAGGGTTGCGATGCGTCGATATTGCTTGATGATACTCCCTCTATGATTGGTGAACAAAATGCAGCACCCAATAGAGACTCTGCTAGAGGTTATGGGGTGATACACAACGCCAAGACGGCAGTTGAGAAGATTTGTCCCGGCGTTGTATCTTGTGCTGATATTCTTGCAGTTGCTGCAAGAGATGCTTCTTTTGCTGTCGGTGGTCCATCATGGACAGTAAGGCTTGGAAGAAGAGATTCGACCACTGCAAGCAAAGCTTTAGCAGAGAATGAGCTTCCACATTTTCAAGCAGGTCTTGATCGGCTTATTTCCATCTTTTCAAATAAAGGACTTAGTACAAGAGATATGGTTGCACTCTCCGGTTCTCATACTATAGGGCAAGCCCAATGTTTTCTCTTCCGTAATAGAATATACAATCAAACTAATATCGATGCAGGATTTGCTAGCACACGTCGAAGGAATTGTCCAACATCGAGTGGGAATGGAAATTTGGCACCACTGGATTTGGTCACACCCAATTCCTTTGACAACAATTACTTCAAAAATCTTGTTCAAAGAAAAGGTTTGCTAGAAACAGATCAAGTTCTCTTTAACGGAGGATCAACAGATAGCATTGTTACAGAGTATAGCAAAGATCCAACTATGTTCAAATCTGACTTTGCAGCAGCAATGATCAAAATGGGAAATATT 966 41.61 FIFSLLSLYHHLNTHASFFQDFIKMSMPPLLVLAFTFLLFGLACDAQLSSSFYDQTCPTALTTIRTVIRQAISQERRMAASLIRLHFHDCFVQGCDASILLDDTPSMIGEQNAAPNRDSARGYGVIHNAKTAVEKICPGVVSCADILAVAARDASFAVGGPSWTVRLGRRDSTTASKALAENELPHFQAGLDRLISIFSNKGLSTRDMVALSGSHTIGQAQCFLFRNRIYNQTNIDAGFASTRRRNCPTSSGNGNLAPLDLVTPNSFDNNYFKNLVQRKGLLETDQVLFNGGSTDSIVTEYSKDPTMFKSDFAAAMIKMGNI 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8173590 8174751 - CsaV3_5G012680.1 Csa05g00971 529358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00971 322 PANTHER PEROXIDASE 27 322 - -
Csa05g00971 322 Pfam Peroxidase 65 304 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa05g00971 322 ProSitePatterns Peroxidases active site signature. 79 90 IPR019794 GO:0004601
Csa05g00971 322 ProSitePatterns Peroxidases proximal heme-ligand signature. 207 217 IPR019793 -
Csa05g00971 322 Gene3D Peroxidase, domain 2 185 319 - -
Csa05g00971 322 SUPERFAMILY Heme-dependent peroxidases 47 322 IPR010255 GO:0004601|GO:0006979|GO:0020037
Csa05g00971 322 ProSiteProfiles Plant heme peroxidase family profile. 47 322 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa05g00971 322 CDD secretory_peroxidase 47 322 IPR033905 GO:0004601|GO:0042744
Csa05g00971 322 Gene3D - 52 322 - -
Csa05g00971 322 PRINTS Haem peroxidase superfamily signature 260 275 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa05g00971 322 PRINTS Haem peroxidase superfamily signature 79 93 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa05g00971 322 PRINTS Haem peroxidase superfamily signature 207 222 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa05g00971 322 PRINTS Haem peroxidase superfamily signature 141 158 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa05g00971 322 PRINTS Haem peroxidase superfamily signature 159 171 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa05g00971 322 PRINTS Plant peroxidase signature 81 101 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa05g00971 322 PRINTS Plant peroxidase signature 159 174 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa05g00971 322 PRINTS Plant peroxidase signature 258 273 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa05g00971 322 PRINTS Plant peroxidase signature 140 150 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa05g00971 322 PRINTS Plant peroxidase signature 206 218 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa05g00971 322 PRINTS Plant peroxidase signature 274 291 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa05g00971 322 PRINTS Plant peroxidase signature 314 322 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa05g00971 322 PRINTS Plant peroxidase signature 121 134 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa05g00971 322 PRINTS Plant peroxidase signature 57 76 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa05g00971 322 PANTHER PEROXIDASE 72-RELATED 27 322 IPR000823 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00969 Csa-Chr5:8163672 Csa05g00971 Csa-Chr5:8173590 2.22E-22 dispersed
Csa05g00971 Csa-Chr5:8173590 Csa06g00217 Csa-Chr6:1493533 1.80E-129 dispersed
Csa05g00971 Csa-Chr5:8173590 Csa05g00978 Csa-Chr5:8923929 0 proximal
Csa05g00970 Csa-Chr5:8170549 Csa05g00971 Csa-Chr5:8173590 1.47E-08 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00971 K00430 - csv:116403994 594.734