Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa05g00977 | ATGGGTCTTCAAAATTTCTTCTCTATCCTTCTTCTCCTCTCCGCCATCTTTCTCCGCTTCCATCTCTCTTGTTCCCAAACCCCCTTAATTTGCCATTCCAATGATTCTGAGGCCTTCCACGACTTCCATCGCACTTTTACTTCTCAAATCCATTCATTGCACGCTAACTGTTCCTCCAATTGCTGCTCTTGTACTGGCCTCACTTGTGACTCTTCTGGGAGGGTTGTGAAAATTGAGCTTGTTGGGATAAAGCTAGCTGGTCAATTACCAAACTCAATTGCAAGATTCGAACACCTCAGAGTTCTCAATTTGTCCTCTAATTGCCTCACTGGCTCTATTCCTTTGGCTCTGTTTCACCTCCCACACTTGGAAGTTTTTGATCTCAGCTTTAATCGGTTCTTGGGGAACTTCTCCACAGGTACCCTCCATTTGCCTTCCCTTCGGATTCTTAATGTTTCTCGTAATTTATTCAACGGTGTTCTTCCATTTCACATCTGTATCAACTCCACTTTTATTGAGGTTCTGAATCTGAGTTTCAATGATTTTCTTGGTGTGTTTCCTTTTCAACTTGCGGACTGTGTTTCTTTGAAGAGACTTCATCTGGAATCGAATTTTATTAGTGGTGGGATTCCTAATGAGATTTCTGGATTGAGAAAATTGACCCATTTGTCTGTTCAGAATAACAAGCTTTCTGGTTCTTTGAATAGAATTGTTGGGAATCTAAGAAGCCTTGTTCGGTTGGATTTGTCATCTAATGAGTTTTTTGGGGAAATTCCTGATGTTTTCTACAACTCTCTGAATTTGAGTTTCTTTGTTGCTGAGTCCAATAGGTTTAGTGGGAGGATTCCCAAGTCCTTGTCAAACTCTGCTTCACTCTCTGTCCTAAACTTGAGAAACAATTCAATAGGGGGAAATCTTGATCTTAATTGTTCAGCAATGAAAAGCCTGGTTACACTTGATTTAGGCTCTAATAGGTTTCAGGGATTTATACCTAGTAATCTTCCCTCTTGTACGCAGCTGAGAAGCATAAATCTTGCTAGGAACAACCTCGGTGGTCAGATCCCTGAAACCTTTAGAAAATTTCAGAGCCTAACGTATTTATCACTTACGAATACGAGCATTGTTAATGTTTCCTCTGCTCTCAATATCTTGCAACATTGTCAGAGTTTGAGTACTGTGGTTCTGACCTTTAACTTCCATGGCGAAGTGTTGGGAGATGATCCTAACTTGCATTTCAAGAGTCTCCAAGTTTTTATAATTGCTAATTGTAGATTGAAGGGAGTGATACCCCAGTGGCTGAGAAGTTCTAACAAGTTGCAGTTTTTGGATTTGTCATGGAACCGTCTTGGAGGAAACATTCCATCCTGGTTCGGCGAGTTTCAATTCATGTTTTACTTAGATTTATCTAATAATTCATTCGTCGGAGGTATCCCGAAAGAGATTACTCAAATGAAAAGTTACATTGACAGAAACTTCTTGCTTGACGAACCTGTGTCACCGGATTTTTCTCTTTTCGTAAAAAGAAATGGAACTGGATGGCAGTACAATCAAGTATGGAGATTTCCACCCACTTTGGACCTCGGTTTTAATAATCTCAGTGGACCTATCTGGCCAGAGTTGGGAAATCTTAAGCAGATTATGGTTCTTGATTTGAAATTCAACAGTTTGTCGGGATCAATTTCGAGCAGCCTCTCTGGGATGGTTAGTTTAGAGACTCTAGATCTTTCTCACAACAAACTTTCAGGAACAATTCCACCATCACTGCAAAAGCTTAACTTTTTGTCCAAGTTCAGTGTTGCATACAATCAATTACATGGAGCGATTCCTAAAGGAGGTCAGTTTCATAGCTTTCCCAACTCTAGTTTTGAAGGAAACAATTTTTGTGTCCAAGATGATCTCTGTGCATCAAGTGATGGAGATGCTCTGGTAGTAACCCACAAATCAAGAATGGTCACGGGGTCTCTTATAGGTATAATTGTGGGTGTTATCTTTGGAATCATTTTTCTTGCAACATTCGTAGTAGTGTTTATGCTTCGGCCACCTCGGGGAAGAGTTGGAGATCCTGAAAACGAAGTGTCTAACATTGACAATAAGGACTTGGAGGAAGTCAAGACAGGATTGGTAGTTTTGTTCCAAAACAATGACAATGGAAGTCTCTCGCTGGAGGATATTTTGAAATCGACGAATGACTTTGATCAAGAAAATATCATTGGATGTGGGGGTTTCGGTTTAGTTTACAAAGCTACCCTTCCTGACGGCAGAAAGGTTGCCATAAAGCGACTGTCTGGTGATTGTGGTCAAATGGACAGAGAATTTCAAGCAGAAATCGAAACACTTTCACGTGCTCAGCATCCAAATCTTGTTCTTCTTCAGGGATATTGTATGTATAAGAACGACAGGCTTTTAATTTACTCTTACATGGAGAATGGTAGCTTAGATTACTGGTTACATGAAAAACCTGATGGTTCATCTTGCCTCGACTGGGATACCCGACTGCAGATAGCCCGGGGGGCTGCTGGGGGGCTGGCATATTTGCATCAATTCTGTGAACCCCATATCCTTCACCGAGATATAAAGTCGAGTAACATTCTTTTAGACAAAAATTTTAAAGCTCATTTAGCTGATTTTGGTCTTGCAAGACTCATTCTTCCCTATGATACCCACGTAACAACCGACCTTGTTGGTACATTGGGCTACATTCCACCCGAGTATGGACAATCCTCGATTGCGACCTACAGAGGAGATGTGTACAGTTTTGGAGTTGTTCTATTAGAGCTTTTGACAGGTAAAAGACCAATAGACATGTGCAGACCGAAAGGACTTCGGGACCTGATCTCTTGGGTGTTCCAAATGAGGAAAGACAAAAAAGTAAGTGAAGTGTTCGACCCATTTGTATACGACAAGAAGAACGAAATGGCTATGGTAGAAGTTCTTGATATCGCATGTCTTTGCTTATGTAAGGTACCTAAAGAGAGACCTTCAACTCAACAGCTAGTTACTTGGCTTGATAAAGTAAGTTTGTAA | 3024 | 40.77 | MGLQNFFSILLLLSAIFLRFHLSCSQTPLICHSNDSEAFHDFHRTFTSQIHSLHANCSSNCCSCTGLTCDSSGRVVKIELVGIKLAGQLPNSIARFEHLRVLNLSSNCLTGSIPLALFHLPHLEVFDLSFNRFLGNFSTGTLHLPSLRILNVSRNLFNGVLPFHICINSTFIEVLNLSFNDFLGVFPFQLADCVSLKRLHLESNFISGGIPNEISGLRKLTHLSVQNNKLSGSLNRIVGNLRSLVRLDLSSNEFFGEIPDVFYNSLNLSFFVAESNRFSGRIPKSLSNSASLSVLNLRNNSIGGNLDLNCSAMKSLVTLDLGSNRFQGFIPSNLPSCTQLRSINLARNNLGGQIPETFRKFQSLTYLSLTNTSIVNVSSALNILQHCQSLSTVVLTFNFHGEVLGDDPNLHFKSLQVFIIANCRLKGVIPQWLRSSNKLQFLDLSWNRLGGNIPSWFGEFQFMFYLDLSNNSFVGGIPKEITQMKSYIDRNFLLDEPVSPDFSLFVKRNGTGWQYNQVWRFPPTLDLGFNNLSGPIWPELGNLKQIMVLDLKFNSLSGSISSSLSGMVSLETLDLSHNKLSGTIPPSLQKLNFLSKFSVAYNQLHGAIPKGGQFHSFPNSSFEGNNFCVQDDLCASSDGDALVVTHKSRMVTGSLIGIIVGVIFGIIFLATFVVVFMLRPPRGRVGDPENEVSNIDNKDLEEVKTGLVVLFQNNDNGSLSLEDILKSTNDFDQENIIGCGGFGLVYKATLPDGRKVAIKRLSGDCGQMDREFQAEIETLSRAQHPNLVLLQGYCMYKNDRLLIYSYMENGSLDYWLHEKPDGSSCLDWDTRLQIARGAAGGLAYLHQFCEPHILHRDIKSSNILLDKNFKAHLADFGLARLILPYDTHVTTDLVGTLGYIPPEYGQSSIATYRGDVYSFGVVLLELLTGKRPIDMCRPKGLRDLISWVFQMRKDKKVSEVFDPFVYDKKNEMAMVEVLDIACLCLCKVPKERPSTQQLVTWLDKVSL* | 1008 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 8900193 | 8903745 | - | CsaV3_5G012830.1 | Csa05g00977 | 529364 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa05g00977 | 1007 | SUPERFAMILY | L domain-like | 515 | 629 | - | - | |
Csa05g00977 | 1007 | Gene3D | Ribonuclease Inhibitor | 32 | 309 | IPR032675 | - | |
Csa05g00977 | 1007 | SMART | serkin_6 | 731 | 1002 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa05g00977 | 1007 | Gene3D | Transferase(Phosphotransferase) domain 1 | 807 | 1006 | - | - | |
Csa05g00977 | 1007 | SUPERFAMILY | Protein kinase-like (PK-like) | 718 | 1002 | IPR011009 | - | |
Csa05g00977 | 1007 | SUPERFAMILY | L domain-like | 61 | 163 | - | - | |
Csa05g00977 | 1007 | SUPERFAMILY | RNI-like | 168 | 485 | - | - | |
Csa05g00977 | 1007 | Pfam | Protein kinase domain | 732 | 999 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa05g00977 | 1007 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 853 | 865 | IPR008271 | GO:0004672|GO:0006468 | |
Csa05g00977 | 1007 | PANTHER | RECEPTOR-LIKE PROTEIN 55 | 11 | 90 | - | - | |
Csa05g00977 | 1007 | PANTHER | RECEPTOR-LIKE PROTEIN 55 | 85 | 162 | - | - | |
Csa05g00977 | 1007 | PANTHER | RECEPTOR-LIKE PROTEIN 55 | 169 | 1005 | - | - | |
Csa05g00977 | 1007 | Pfam | Leucine Rich Repeat | 438 | 458 | IPR001611 | GO:0005515 | |
Csa05g00977 | 1007 | PRINTS | Leucine-rich repeat signature | 439 | 452 | - | - | |
Csa05g00977 | 1007 | PRINTS | Leucine-rich repeat signature | 567 | 580 | - | - | |
Csa05g00977 | 1007 | Pfam | Leucine Rich repeats (2 copies) | 98 | 138 | IPR025875 | - | |
Csa05g00977 | 1007 | Pfam | Leucine rich repeat | 315 | 374 | IPR001611 | GO:0005515 | |
Csa05g00977 | 1007 | Pfam | Leucine rich repeat | 173 | 230 | IPR001611 | GO:0005515 | |
Csa05g00977 | 1007 | Pfam | Leucine rich repeat | 525 | 580 | IPR001611 | GO:0005515 | |
Csa05g00977 | 1007 | Gene3D | Ribonuclease Inhibitor | 310 | 637 | IPR032675 | - | |
Csa05g00977 | 1007 | ProSiteProfiles | Protein kinase domain profile. | 731 | 1002 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa05g00977 | 1007 | ProSitePatterns | Protein kinases ATP-binding region signature. | 737 | 759 | IPR017441 | GO:0005524 | |
Csa05g00977 | 1007 | Gene3D | Phosphorylase Kinase; domain 1 | 691 | 806 | - | - | |
Csa05g00977 | 1007 | PANTHER | OSJNBB0004A17.8 PROTEIN | 85 | 162 | - | - | |
Csa05g00977 | 1007 | PANTHER | OSJNBB0004A17.8 PROTEIN | 11 | 90 | - | - | |
Csa05g00977 | 1007 | PANTHER | OSJNBB0004A17.8 PROTEIN | 169 | 1005 | - | - | |
Csa05g00977 | 1007 | SMART | LRR_typ_2 | 313 | 337 | IPR003591 | - | |
Csa05g00977 | 1007 | SMART | LRR_typ_2 | 217 | 240 | IPR003591 | - | |
Csa05g00977 | 1007 | SMART | LRR_typ_2 | 567 | 590 | IPR003591 | - | |
Csa05g00977 | 1007 | SMART | LRR_typ_2 | 144 | 168 | IPR003591 | - | |
Csa05g00977 | 1007 | SMART | LRR_typ_2 | 96 | 120 | IPR003591 | - | |
Csa05g00977 | 1007 | SMART | LRR_typ_2 | 241 | 264 | IPR003591 | - | |
Csa05g00977 | 1007 | ProSiteProfiles | Leucine-rich repeat profile. | 569 | 592 | IPR001611 | GO:0005515 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa03g01952 | Csa-Chr3:15396212 | Csa05g00977 | Csa-Chr5:8900193 | 0 | dispersed | |
Csa05g00966 | Csa-Chr5:8143202 | Csa05g00977 | Csa-Chr5:8900193 | 4.24E-125 | dispersed | |
Csa05g00967 | Csa-Chr5:8147974 | Csa05g00977 | Csa-Chr5:8900193 | 5.07E-55 | dispersed | |
Csa05g00977 | Csa-Chr5:8900193 | Csa07g02075 | Csa-Chr7:20035071 | 0 | dispersed | |
Csa05g00968 | Csa-Chr5:8148276 | Csa05g00977 | Csa-Chr5:8900193 | 8.75E-08 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
78234 | PF00069 | Pkinase | 2.30E-44 | CL0016 | Csa | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa05g00977 | - | - | csv:116404121 | 1992.24 |