Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00977 ATGGGTCTTCAAAATTTCTTCTCTATCCTTCTTCTCCTCTCCGCCATCTTTCTCCGCTTCCATCTCTCTTGTTCCCAAACCCCCTTAATTTGCCATTCCAATGATTCTGAGGCCTTCCACGACTTCCATCGCACTTTTACTTCTCAAATCCATTCATTGCACGCTAACTGTTCCTCCAATTGCTGCTCTTGTACTGGCCTCACTTGTGACTCTTCTGGGAGGGTTGTGAAAATTGAGCTTGTTGGGATAAAGCTAGCTGGTCAATTACCAAACTCAATTGCAAGATTCGAACACCTCAGAGTTCTCAATTTGTCCTCTAATTGCCTCACTGGCTCTATTCCTTTGGCTCTGTTTCACCTCCCACACTTGGAAGTTTTTGATCTCAGCTTTAATCGGTTCTTGGGGAACTTCTCCACAGGTACCCTCCATTTGCCTTCCCTTCGGATTCTTAATGTTTCTCGTAATTTATTCAACGGTGTTCTTCCATTTCACATCTGTATCAACTCCACTTTTATTGAGGTTCTGAATCTGAGTTTCAATGATTTTCTTGGTGTGTTTCCTTTTCAACTTGCGGACTGTGTTTCTTTGAAGAGACTTCATCTGGAATCGAATTTTATTAGTGGTGGGATTCCTAATGAGATTTCTGGATTGAGAAAATTGACCCATTTGTCTGTTCAGAATAACAAGCTTTCTGGTTCTTTGAATAGAATTGTTGGGAATCTAAGAAGCCTTGTTCGGTTGGATTTGTCATCTAATGAGTTTTTTGGGGAAATTCCTGATGTTTTCTACAACTCTCTGAATTTGAGTTTCTTTGTTGCTGAGTCCAATAGGTTTAGTGGGAGGATTCCCAAGTCCTTGTCAAACTCTGCTTCACTCTCTGTCCTAAACTTGAGAAACAATTCAATAGGGGGAAATCTTGATCTTAATTGTTCAGCAATGAAAAGCCTGGTTACACTTGATTTAGGCTCTAATAGGTTTCAGGGATTTATACCTAGTAATCTTCCCTCTTGTACGCAGCTGAGAAGCATAAATCTTGCTAGGAACAACCTCGGTGGTCAGATCCCTGAAACCTTTAGAAAATTTCAGAGCCTAACGTATTTATCACTTACGAATACGAGCATTGTTAATGTTTCCTCTGCTCTCAATATCTTGCAACATTGTCAGAGTTTGAGTACTGTGGTTCTGACCTTTAACTTCCATGGCGAAGTGTTGGGAGATGATCCTAACTTGCATTTCAAGAGTCTCCAAGTTTTTATAATTGCTAATTGTAGATTGAAGGGAGTGATACCCCAGTGGCTGAGAAGTTCTAACAAGTTGCAGTTTTTGGATTTGTCATGGAACCGTCTTGGAGGAAACATTCCATCCTGGTTCGGCGAGTTTCAATTCATGTTTTACTTAGATTTATCTAATAATTCATTCGTCGGAGGTATCCCGAAAGAGATTACTCAAATGAAAAGTTACATTGACAGAAACTTCTTGCTTGACGAACCTGTGTCACCGGATTTTTCTCTTTTCGTAAAAAGAAATGGAACTGGATGGCAGTACAATCAAGTATGGAGATTTCCACCCACTTTGGACCTCGGTTTTAATAATCTCAGTGGACCTATCTGGCCAGAGTTGGGAAATCTTAAGCAGATTATGGTTCTTGATTTGAAATTCAACAGTTTGTCGGGATCAATTTCGAGCAGCCTCTCTGGGATGGTTAGTTTAGAGACTCTAGATCTTTCTCACAACAAACTTTCAGGAACAATTCCACCATCACTGCAAAAGCTTAACTTTTTGTCCAAGTTCAGTGTTGCATACAATCAATTACATGGAGCGATTCCTAAAGGAGGTCAGTTTCATAGCTTTCCCAACTCTAGTTTTGAAGGAAACAATTTTTGTGTCCAAGATGATCTCTGTGCATCAAGTGATGGAGATGCTCTGGTAGTAACCCACAAATCAAGAATGGTCACGGGGTCTCTTATAGGTATAATTGTGGGTGTTATCTTTGGAATCATTTTTCTTGCAACATTCGTAGTAGTGTTTATGCTTCGGCCACCTCGGGGAAGAGTTGGAGATCCTGAAAACGAAGTGTCTAACATTGACAATAAGGACTTGGAGGAAGTCAAGACAGGATTGGTAGTTTTGTTCCAAAACAATGACAATGGAAGTCTCTCGCTGGAGGATATTTTGAAATCGACGAATGACTTTGATCAAGAAAATATCATTGGATGTGGGGGTTTCGGTTTAGTTTACAAAGCTACCCTTCCTGACGGCAGAAAGGTTGCCATAAAGCGACTGTCTGGTGATTGTGGTCAAATGGACAGAGAATTTCAAGCAGAAATCGAAACACTTTCACGTGCTCAGCATCCAAATCTTGTTCTTCTTCAGGGATATTGTATGTATAAGAACGACAGGCTTTTAATTTACTCTTACATGGAGAATGGTAGCTTAGATTACTGGTTACATGAAAAACCTGATGGTTCATCTTGCCTCGACTGGGATACCCGACTGCAGATAGCCCGGGGGGCTGCTGGGGGGCTGGCATATTTGCATCAATTCTGTGAACCCCATATCCTTCACCGAGATATAAAGTCGAGTAACATTCTTTTAGACAAAAATTTTAAAGCTCATTTAGCTGATTTTGGTCTTGCAAGACTCATTCTTCCCTATGATACCCACGTAACAACCGACCTTGTTGGTACATTGGGCTACATTCCACCCGAGTATGGACAATCCTCGATTGCGACCTACAGAGGAGATGTGTACAGTTTTGGAGTTGTTCTATTAGAGCTTTTGACAGGTAAAAGACCAATAGACATGTGCAGACCGAAAGGACTTCGGGACCTGATCTCTTGGGTGTTCCAAATGAGGAAAGACAAAAAAGTAAGTGAAGTGTTCGACCCATTTGTATACGACAAGAAGAACGAAATGGCTATGGTAGAAGTTCTTGATATCGCATGTCTTTGCTTATGTAAGGTACCTAAAGAGAGACCTTCAACTCAACAGCTAGTTACTTGGCTTGATAAAGTAAGTTTGTAA 3024 40.77 MGLQNFFSILLLLSAIFLRFHLSCSQTPLICHSNDSEAFHDFHRTFTSQIHSLHANCSSNCCSCTGLTCDSSGRVVKIELVGIKLAGQLPNSIARFEHLRVLNLSSNCLTGSIPLALFHLPHLEVFDLSFNRFLGNFSTGTLHLPSLRILNVSRNLFNGVLPFHICINSTFIEVLNLSFNDFLGVFPFQLADCVSLKRLHLESNFISGGIPNEISGLRKLTHLSVQNNKLSGSLNRIVGNLRSLVRLDLSSNEFFGEIPDVFYNSLNLSFFVAESNRFSGRIPKSLSNSASLSVLNLRNNSIGGNLDLNCSAMKSLVTLDLGSNRFQGFIPSNLPSCTQLRSINLARNNLGGQIPETFRKFQSLTYLSLTNTSIVNVSSALNILQHCQSLSTVVLTFNFHGEVLGDDPNLHFKSLQVFIIANCRLKGVIPQWLRSSNKLQFLDLSWNRLGGNIPSWFGEFQFMFYLDLSNNSFVGGIPKEITQMKSYIDRNFLLDEPVSPDFSLFVKRNGTGWQYNQVWRFPPTLDLGFNNLSGPIWPELGNLKQIMVLDLKFNSLSGSISSSLSGMVSLETLDLSHNKLSGTIPPSLQKLNFLSKFSVAYNQLHGAIPKGGQFHSFPNSSFEGNNFCVQDDLCASSDGDALVVTHKSRMVTGSLIGIIVGVIFGIIFLATFVVVFMLRPPRGRVGDPENEVSNIDNKDLEEVKTGLVVLFQNNDNGSLSLEDILKSTNDFDQENIIGCGGFGLVYKATLPDGRKVAIKRLSGDCGQMDREFQAEIETLSRAQHPNLVLLQGYCMYKNDRLLIYSYMENGSLDYWLHEKPDGSSCLDWDTRLQIARGAAGGLAYLHQFCEPHILHRDIKSSNILLDKNFKAHLADFGLARLILPYDTHVTTDLVGTLGYIPPEYGQSSIATYRGDVYSFGVVLLELLTGKRPIDMCRPKGLRDLISWVFQMRKDKKVSEVFDPFVYDKKNEMAMVEVLDIACLCLCKVPKERPSTQQLVTWLDKVSL* 1008
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8900193 8903745 - CsaV3_5G012830.1 Csa05g00977 529364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00977 1007 SUPERFAMILY L domain-like 515 629 - -
Csa05g00977 1007 Gene3D Ribonuclease Inhibitor 32 309 IPR032675 -
Csa05g00977 1007 SMART serkin_6 731 1002 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g00977 1007 Gene3D Transferase(Phosphotransferase) domain 1 807 1006 - -
Csa05g00977 1007 SUPERFAMILY Protein kinase-like (PK-like) 718 1002 IPR011009 -
Csa05g00977 1007 SUPERFAMILY L domain-like 61 163 - -
Csa05g00977 1007 SUPERFAMILY RNI-like 168 485 - -
Csa05g00977 1007 Pfam Protein kinase domain 732 999 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g00977 1007 ProSitePatterns Serine/Threonine protein kinases active-site signature. 853 865 IPR008271 GO:0004672|GO:0006468
Csa05g00977 1007 PANTHER RECEPTOR-LIKE PROTEIN 55 11 90 - -
Csa05g00977 1007 PANTHER RECEPTOR-LIKE PROTEIN 55 85 162 - -
Csa05g00977 1007 PANTHER RECEPTOR-LIKE PROTEIN 55 169 1005 - -
Csa05g00977 1007 Pfam Leucine Rich Repeat 438 458 IPR001611 GO:0005515
Csa05g00977 1007 PRINTS Leucine-rich repeat signature 439 452 - -
Csa05g00977 1007 PRINTS Leucine-rich repeat signature 567 580 - -
Csa05g00977 1007 Pfam Leucine Rich repeats (2 copies) 98 138 IPR025875 -
Csa05g00977 1007 Pfam Leucine rich repeat 315 374 IPR001611 GO:0005515
Csa05g00977 1007 Pfam Leucine rich repeat 173 230 IPR001611 GO:0005515
Csa05g00977 1007 Pfam Leucine rich repeat 525 580 IPR001611 GO:0005515
Csa05g00977 1007 Gene3D Ribonuclease Inhibitor 310 637 IPR032675 -
Csa05g00977 1007 ProSiteProfiles Protein kinase domain profile. 731 1002 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g00977 1007 ProSitePatterns Protein kinases ATP-binding region signature. 737 759 IPR017441 GO:0005524
Csa05g00977 1007 Gene3D Phosphorylase Kinase; domain 1 691 806 - -
Csa05g00977 1007 PANTHER OSJNBB0004A17.8 PROTEIN 85 162 - -
Csa05g00977 1007 PANTHER OSJNBB0004A17.8 PROTEIN 11 90 - -
Csa05g00977 1007 PANTHER OSJNBB0004A17.8 PROTEIN 169 1005 - -
Csa05g00977 1007 SMART LRR_typ_2 313 337 IPR003591 -
Csa05g00977 1007 SMART LRR_typ_2 217 240 IPR003591 -
Csa05g00977 1007 SMART LRR_typ_2 567 590 IPR003591 -
Csa05g00977 1007 SMART LRR_typ_2 144 168 IPR003591 -
Csa05g00977 1007 SMART LRR_typ_2 96 120 IPR003591 -
Csa05g00977 1007 SMART LRR_typ_2 241 264 IPR003591 -
Csa05g00977 1007 ProSiteProfiles Leucine-rich repeat profile. 569 592 IPR001611 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01952 Csa-Chr3:15396212 Csa05g00977 Csa-Chr5:8900193 0 dispersed
Csa05g00966 Csa-Chr5:8143202 Csa05g00977 Csa-Chr5:8900193 4.24E-125 dispersed
Csa05g00967 Csa-Chr5:8147974 Csa05g00977 Csa-Chr5:8900193 5.07E-55 dispersed
Csa05g00977 Csa-Chr5:8900193 Csa07g02075 Csa-Chr7:20035071 0 dispersed
Csa05g00968 Csa-Chr5:8148276 Csa05g00977 Csa-Chr5:8900193 8.75E-08 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78234 PF00069 Pkinase 2.30E-44 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00977 - - csv:116404121 1992.24