Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00978 ATGGCAGCTACGGTGACCACAAAACTAGTCATTCTTATAACTGCAATGGCGTTATTACTTTTGGGCACAACTGAAGCCCAACTTTCGCCTACATTCTACGATCAAACTTGTCCTACTGCACTCACTACTATTAGAACTGTTATTAGGCAAGCAGTTTCTCAAGAACGTCGAATGGCTGCATCTCTCATTCGACTTCATTTCCATGATTGTTTTGTTCAAGGTTGTGATGCATCAATTTTACTCGATGATACTCCCTCTATGATTGGTGAACAAAATGCAGCACCAAACATAAACTCTGCAAGAGGTTATGGAGTGATTCATAAGGCTAAAACTGAAGTTGAGAAGAGATGTCCTGGCACAGTATCTTGTGCAGACATCCTTGCTGTGGCTGCAAGAGATGCATCTTTTTCTGTTGGTGGTCCATCTTGGACGGTAAAGCTTGGAAGAAGAGATTCTACCTCTGCAAGTAAAACTTTAGCAGAGAGTGAGCTTCCACATTTCCAAGAAAGCCTTGACAGACTTATATCCATTTTTGCAAATAAAGGTCTTAGCACCAGAGATATGGTTGCACTCTCAGGTTCTCATACTATAGGACAATCTCAATGCTTTCTTTTTCGCAATAGGATATACAACCAAAGCAATATTGATGCAGGATTTGCTCGCACTCGACAAAGAAATTGTCCATCATCGGGTGGGAATGGAAATTTGGCACCACTTGATTTGGTCACACCCAATTCTTTTGACAATAATTATTTCAAAAATCTTATTCAAATGAAGGGTTTGCTTGAAACAGATCAAGTTCTTTTTAGTGGAGGATCAACGGATAATATTGTTACTGAATACAGTAGAAATCCAAGTACATTCAAATCGGATTTTGCGGCTGCCATGATTAAAATGGGAGACATCCAACCTCTTACTGGTTTAGAAGGAGAAATAAGAAATATATGTGGTGCGGTCAATTAA 963 39.46 MAATVTTKLVILITAMALLLLGTTEAQLSPTFYDQTCPTALTTIRTVIRQAVSQERRMAASLIRLHFHDCFVQGCDASILLDDTPSMIGEQNAAPNINSARGYGVIHKAKTEVEKRCPGTVSCADILAVAARDASFSVGGPSWTVKLGRRDSTSASKTLAESELPHFQESLDRLISIFANKGLSTRDMVALSGSHTIGQSQCFLFRNRIYNQSNIDAGFARTRQRNCPSSGGNGNLAPLDLVTPNSFDNNYFKNLIQMKGLLETDQVLFSGGSTDNIVTEYSRNPSTFKSDFAAAMIKMGDIQPLTGLEGEIRNICGAVN* 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8923929 8925192 + CsaV3_5G012840.1 Csa05g00978 529365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00978 320 PANTHER PEROXIDASE 72-RELATED 10 319 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa05g00978 320 Gene3D Peroxidase, domain 2 165 299 - -
Csa05g00978 320 PRINTS Haem peroxidase superfamily signature 59 73 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa05g00978 320 PRINTS Haem peroxidase superfamily signature 121 138 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa05g00978 320 PRINTS Haem peroxidase superfamily signature 139 151 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa05g00978 320 PRINTS Haem peroxidase superfamily signature 187 202 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa05g00978 320 PRINTS Haem peroxidase superfamily signature 240 255 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa05g00978 320 Pfam Peroxidase 45 284 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa05g00978 320 ProSitePatterns Peroxidases active site signature. 59 70 IPR019794 GO:0004601
Csa05g00978 320 PRINTS Plant peroxidase signature 37 56 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa05g00978 320 PRINTS Plant peroxidase signature 61 81 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa05g00978 320 PRINTS Plant peroxidase signature 101 114 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa05g00978 320 PRINTS Plant peroxidase signature 120 130 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa05g00978 320 PRINTS Plant peroxidase signature 139 154 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa05g00978 320 PRINTS Plant peroxidase signature 186 198 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa05g00978 320 PRINTS Plant peroxidase signature 238 253 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa05g00978 320 PRINTS Plant peroxidase signature 254 271 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa05g00978 320 PRINTS Plant peroxidase signature 294 307 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa05g00978 320 PANTHER PEROXIDASE 10 319 - -
Csa05g00978 320 ProSitePatterns Peroxidases proximal heme-ligand signature. 187 197 IPR019793 -
Csa05g00978 320 Gene3D - 31 316 - -
Csa05g00978 320 ProSiteProfiles Plant heme peroxidase family profile. 27 320 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa05g00978 320 SUPERFAMILY Heme-dependent peroxidases 27 320 IPR010255 GO:0004601|GO:0006979|GO:0020037
Csa05g00978 320 CDD secretory_peroxidase 27 319 IPR033905 GO:0004601|GO:0042744
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00970 Csa-Chr5:8170549 Csa05g00978 Csa-Chr5:8923929 1.56E-23 dispersed
Csa05g00978 Csa-Chr5:8923929 Csa06g01604 Csa-Chr6:13801029 3.37E-136 dispersed
Csa05g00971 Csa-Chr5:8173590 Csa05g00978 Csa-Chr5:8923929 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00978 K00430 - csv:116403796 633.639