Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa05g00978 | ATGGCAGCTACGGTGACCACAAAACTAGTCATTCTTATAACTGCAATGGCGTTATTACTTTTGGGCACAACTGAAGCCCAACTTTCGCCTACATTCTACGATCAAACTTGTCCTACTGCACTCACTACTATTAGAACTGTTATTAGGCAAGCAGTTTCTCAAGAACGTCGAATGGCTGCATCTCTCATTCGACTTCATTTCCATGATTGTTTTGTTCAAGGTTGTGATGCATCAATTTTACTCGATGATACTCCCTCTATGATTGGTGAACAAAATGCAGCACCAAACATAAACTCTGCAAGAGGTTATGGAGTGATTCATAAGGCTAAAACTGAAGTTGAGAAGAGATGTCCTGGCACAGTATCTTGTGCAGACATCCTTGCTGTGGCTGCAAGAGATGCATCTTTTTCTGTTGGTGGTCCATCTTGGACGGTAAAGCTTGGAAGAAGAGATTCTACCTCTGCAAGTAAAACTTTAGCAGAGAGTGAGCTTCCACATTTCCAAGAAAGCCTTGACAGACTTATATCCATTTTTGCAAATAAAGGTCTTAGCACCAGAGATATGGTTGCACTCTCAGGTTCTCATACTATAGGACAATCTCAATGCTTTCTTTTTCGCAATAGGATATACAACCAAAGCAATATTGATGCAGGATTTGCTCGCACTCGACAAAGAAATTGTCCATCATCGGGTGGGAATGGAAATTTGGCACCACTTGATTTGGTCACACCCAATTCTTTTGACAATAATTATTTCAAAAATCTTATTCAAATGAAGGGTTTGCTTGAAACAGATCAAGTTCTTTTTAGTGGAGGATCAACGGATAATATTGTTACTGAATACAGTAGAAATCCAAGTACATTCAAATCGGATTTTGCGGCTGCCATGATTAAAATGGGAGACATCCAACCTCTTACTGGTTTAGAAGGAGAAATAAGAAATATATGTGGTGCGGTCAATTAA | 963 | 39.46 | MAATVTTKLVILITAMALLLLGTTEAQLSPTFYDQTCPTALTTIRTVIRQAVSQERRMAASLIRLHFHDCFVQGCDASILLDDTPSMIGEQNAAPNINSARGYGVIHKAKTEVEKRCPGTVSCADILAVAARDASFSVGGPSWTVKLGRRDSTSASKTLAESELPHFQESLDRLISIFANKGLSTRDMVALSGSHTIGQSQCFLFRNRIYNQSNIDAGFARTRQRNCPSSGGNGNLAPLDLVTPNSFDNNYFKNLIQMKGLLETDQVLFSGGSTDNIVTEYSRNPSTFKSDFAAAMIKMGDIQPLTGLEGEIRNICGAVN* | 321 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 8923929 | 8925192 | + | CsaV3_5G012840.1 | Csa05g00978 | 529365 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa05g00978 | 320 | PANTHER | PEROXIDASE 72-RELATED | 10 | 319 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Csa05g00978 | 320 | Gene3D | Peroxidase, domain 2 | 165 | 299 | - | - | |
Csa05g00978 | 320 | PRINTS | Haem peroxidase superfamily signature | 59 | 73 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Csa05g00978 | 320 | PRINTS | Haem peroxidase superfamily signature | 121 | 138 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Csa05g00978 | 320 | PRINTS | Haem peroxidase superfamily signature | 139 | 151 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Csa05g00978 | 320 | PRINTS | Haem peroxidase superfamily signature | 187 | 202 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Csa05g00978 | 320 | PRINTS | Haem peroxidase superfamily signature | 240 | 255 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Csa05g00978 | 320 | Pfam | Peroxidase | 45 | 284 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Csa05g00978 | 320 | ProSitePatterns | Peroxidases active site signature. | 59 | 70 | IPR019794 | GO:0004601 | |
Csa05g00978 | 320 | PRINTS | Plant peroxidase signature | 37 | 56 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Csa05g00978 | 320 | PRINTS | Plant peroxidase signature | 61 | 81 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Csa05g00978 | 320 | PRINTS | Plant peroxidase signature | 101 | 114 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Csa05g00978 | 320 | PRINTS | Plant peroxidase signature | 120 | 130 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Csa05g00978 | 320 | PRINTS | Plant peroxidase signature | 139 | 154 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Csa05g00978 | 320 | PRINTS | Plant peroxidase signature | 186 | 198 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Csa05g00978 | 320 | PRINTS | Plant peroxidase signature | 238 | 253 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Csa05g00978 | 320 | PRINTS | Plant peroxidase signature | 254 | 271 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Csa05g00978 | 320 | PRINTS | Plant peroxidase signature | 294 | 307 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Csa05g00978 | 320 | PANTHER | PEROXIDASE | 10 | 319 | - | - | |
Csa05g00978 | 320 | ProSitePatterns | Peroxidases proximal heme-ligand signature. | 187 | 197 | IPR019793 | - | |
Csa05g00978 | 320 | Gene3D | - | 31 | 316 | - | - | |
Csa05g00978 | 320 | ProSiteProfiles | Plant heme peroxidase family profile. | 27 | 320 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Csa05g00978 | 320 | SUPERFAMILY | Heme-dependent peroxidases | 27 | 320 | IPR010255 | GO:0004601|GO:0006979|GO:0020037 | |
Csa05g00978 | 320 | CDD | secretory_peroxidase | 27 | 319 | IPR033905 | GO:0004601|GO:0042744 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa05g00970 | Csa-Chr5:8170549 | Csa05g00978 | Csa-Chr5:8923929 | 1.56E-23 | dispersed | |
Csa05g00978 | Csa-Chr5:8923929 | Csa06g01604 | Csa-Chr6:13801029 | 3.37E-136 | dispersed | |
Csa05g00971 | Csa-Chr5:8173590 | Csa05g00978 | Csa-Chr5:8923929 | 0 | proximal |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa05g00978 | K00430 | - | csv:116403796 | 633.639 |