Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00994 ATGTTAATCTACAAGGGAATGGATGCTGATAACAAAGTTAGAAGAAAGGAAGTTCTGGGAAGTATGTGTGACCAGAGGGCAAGGATGCTTCAGGATCAATTTAGTGTCAGTGTCAACCATGTCCATGCTTTGGCCATTCTCATTTCCACTTTCCACTACTCCAAAAATGTATCAGCAATTGATCAGGAAACTTTTGCTGAGTACACAGCCCGAACAGCTTTCGAGCGGCCTTTGCTTAGTGGAGTGGCATTTGCGCAAAGAGTGGTGCACTTTGAGCGAGAAAAATTTGAGAAGCAGCATGGGTGGACTATAAAAACAATGGAAAGGGAACCATCACCTATAAAGGATGAGTATGCGCCAGTCATATTTTCCCAGGAGACAGTTTCCTATATCGAATCTCTTGATATGATGTCTGGAGAGGAGGACCGTGAGAACATTTTGAGGTCAAGAGAAACAGGTAAAGCTGTTTTAACGAGCCCTTTCAGGCTGCTGGGTTCTCATCATCTTGGAGTTGTGCTGACAATACCTGTTTATAAAACTAAGCTTCCTCTAAATCCAACAATGGATGAACGAACACGAGCAACGGCAGGCTACCTTGGTGGAGCATTTGATGTGGAGTCGCTTGTGGAAAATTTACTTGGACAACTTGCTGGAAATCAGGCGATTTTGGTGAATGTATACGATGTCACAAACTACTCTGATCCCCTAGTAATGTATGGTCATCAATATGAAGATGGTGACATGTCTCTTTCACATGAGAGCAAACTAGATTTTGGAGATCCATTTAGGAAGCATCAGATGATATGCAGATATCATCAGAAAGCACCAACATTATGGACGGCACTTACTACTGCATTCTTATTCTTTGTGATTGGATTGTTAGTGGGATATATCTTATACGGTGCAGCAACTCATATTGTTAAAGTGGAGGATGATTTTCATGAAATGCAAGAACTGAAAGTTCGAGCCGAAGCTGCTGATATTGCAAAATCTCAGTTTCTCGCCACAGTCTCTCATGAAATAAGGACACCCATGAATGGCATCCTTGGAATGCTTGCTTTACTTCTTGATACTGAGCTGAGTTCAACTCAAAGGGATTATGCTCAAACTGCTCAGGCCTGTGGAAAAGCACTGATAGCGTTAATAAATGAGGTGCTTGACCGGGCAAAAATTGAAGCTGGGAAGTTGGAGCTTGAAGCGGTTCCTTTCGACCTTAGATTGATACTAGATGATGTTTTGTCTTTGTTTTCTGAAAAGTCAAGACACAAGGGAGTTGAGTTGGCAGTATTCGTTTCTGACAAAGTTCCTGAAATTGTTATGGGAGATCCTGGAAGGTTCAGACAAGTAATCACAAATCTCGTGGGTAACTCTGTGAAATTTACAGAACATGGACATATATTTGTCAAAGTTCAATTAGCTGAACAATCAATGGTCTCTACGAATATCAAATCTGAAACTCACGTGAACGGAAACTCAGAAGATGGTGCATCGCACAATAAACATCAGTTTGAAACCTTAAGTGGATTTGAGGCAGCTGATAATCAAAACAGTTGGGACACTTTTAAGCACCTAGCAAATGAGGAATTTCAACCAAACGGTTCAAGCAATCTCATGGCTACAAATGAAATTTCTGATATTGTTACTGTCATGATATCTGTGGAAGATACAGGAATTGGGATTCCATTAAGCGCACAAGGTCGGGTTTTTATGCGGTTCATGCAAGCAGATAGCTCAACATCCAGAAACTATGGTGGAACTGGTATTGGCTTAGACATCAGTAAGTGTTTGGTTGAATTAATGGGCGGCCAGATAAACTTTGTAAGCAAGCCTCAGGTTGGAAGCACATTCTCATTTACTGCTGTTTTTGGGAGATGTGAGAAGAAAGCGACAGTTAACATCAAAAAGTCGAATTTGGAGGAACTTCCTTCTGCATTTAGAGGATTGAAAGCAGTTGTAGTTGATGGGAAACCAGTTAGAGCTGCTGTTACCAAATATCATTTGAAAAGGCTTGGCATCCTGGTTGAAGTTGCCAGTAGTGTCAAGATGGCTGCAGCTTTATGGGGGAAAAATGGATCAGTTAGATCAAGCAATATACTTCAGCCTGACGTAATCCTTCTCGAGAAAGATATCTTTATTTCAAATGAGGAATGTGGTTCTTCTAATCTGCTTCATCAACTAGACTGGAAGCAGAATGGTCATACCTTAAAACTACCAAAATTGATTCTTCTTGCAACCTGCATGAGCACGGTGGAATTTGATAAAGCGAAGGAAATGGGTTTCTCTGACACTTTGATCATGAAACCATTGAGAGCAAGCATGATCGGTGCATGTCTTCAACAGGTGCTTGGCTCAGGAAAGAAACGACAGCTGGGGAAGGACATGGCCAATGGCTCTAACTTTCTTAAAGGGCTGCTCTGTGGTAAGAAAATATTGGTCGTTGATGACAATAAGGTAAACCGAAGAGTTGCTGCAGGTGCTTTAAAGAAATTTGGTGCCGATGTAGAGTGTGTCGAGAGCGGGAAAGCTGCATTGGCATTGCTTCAACTGCCACACAGTTTTGATGCTTGCTTTATGGATATTCAGATGCCAGAAATGGATGGATTTGAAGCAACCCGAAGAATCAGGATGATGGAGAGCAAGGAAAATGAGGTACTGATTAGGGAATCAAATGGCAAAGAAAATGCAAGGAAAGATGAGTGGCATGTTCCAATATTAGCCATGACCGCAGATGTAATTCACGCAACATACGACGAGTGTCTGAAATGTGGGATGGATGGATATGTATCGAAGCCATTTGAGGAAGAGAATCTTTACCAGGCAGTTGCCAAGTTTTTCAATACAAAGCCCATCACTGATTCATGA 2862 41.58 MLIYKGMDADNKVRRKEVLGSMCDQRARMLQDQFSVSVNHVHALAILISTFHYSKNVSAIDQETFAEYTARTAFERPLLSGVAFAQRVVHFEREKFEKQHGWTIKTMEREPSPIKDEYAPVIFSQETVSYIESLDMMSGEEDRENILRSRETGKAVLTSPFRLLGSHHLGVVLTIPVYKTKLPLNPTMDERTRATAGYLGGAFDVESLVENLLGQLAGNQAILVNVYDVTNYSDPLVMYGHQYEDGDMSLSHESKLDFGDPFRKHQMICRYHQKAPTLWTALTTAFLFFVIGLLVGYILYGAATHIVKVEDDFHEMQELKVRAEAADIAKSQFLATVSHEIRTPMNGILGMLALLLDTELSSTQRDYAQTAQACGKALIALINEVLDRAKIEAGKLELEAVPFDLRLILDDVLSLFSEKSRHKGVELAVFVSDKVPEIVMGDPGRFRQVITNLVGNSVKFTEHGHIFVKVQLAEQSMVSTNIKSETHVNGNSEDGASHNKHQFETLSGFEAADNQNSWDTFKHLANEEFQPNGSSNLMATNEISDIVTVMISVEDTGIGIPLSAQGRVFMRFMQADSSTSRNYGGTGIGLDISKCLVELMGGQINFVSKPQVGSTFSFTAVFGRCEKKATVNIKKSNLEELPSAFRGLKAVVVDGKPVRAAVTKYHLKRLGILVEVASSVKMAAALWGKNGSVRSSNILQPDVILLEKDIFISNEECGSSNLLHQLDWKQNGHTLKLPKLILLATCMSTVEFDKAKEMGFSDTLIMKPLRASMIGACLQQVLGSGKKRQLGKDMANGSNFLKGLLCGKKILVVDDNKVNRRVAAGALKKFGADVECVESGKAALALLQLPHSFDACFMDIQMPEMDGFEATRRIRMMESKENEVLIRESNGKENARKDEWHVPILAMTADVIHATYDECLKCGMDGYVSKPFEEENLYQAVAKFFNTKPITDS* 954
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9280299 9289384 - CsaV3_5G013000.1 Csa05g00994 529381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00994 953 ProSiteProfiles Methylthiotransferase N-terminal domain profile. 663 783 IPR013848 GO:0035596|GO:0051539
Csa05g00994 953 ProSiteProfiles CHASE domain profile. 56 268 IPR006189 -
Csa05g00994 953 Gene3D - 804 952 - -
Csa05g00994 953 PRINTS Bacterial sensor protein C-terminal signature 549 563 IPR004358 GO:0016310|GO:0016772
Csa05g00994 953 PRINTS Bacterial sensor protein C-terminal signature 567 577 IPR004358 GO:0016310|GO:0016772
Csa05g00994 953 PRINTS Bacterial sensor protein C-terminal signature 608 621 IPR004358 GO:0016310|GO:0016772
Csa05g00994 953 PRINTS Bacterial sensor protein C-terminal signature 584 602 IPR004358 GO:0016310|GO:0016772
Csa05g00994 953 PANTHER TWO-COMPONENT HISTIDINE KINASE 1 948 - -
Csa05g00994 953 ProSiteProfiles Response regulatory domain profile. 809 945 IPR001789 GO:0000160
Csa05g00994 953 CDD REC_hyHK_CKI1_RcsC-like 810 941 - -
Csa05g00994 953 Pfam CHASE domain 59 239 IPR006189 -
Csa05g00994 953 SMART CHASE_2 56 241 IPR006189 -
Csa05g00994 953 CDD HATPase_EvgS-ArcB-TorS-like 446 622 - -
Csa05g00994 953 Pfam Response regulator receiver domain 810 941 IPR001789 GO:0000160
Csa05g00994 953 ProSiteProfiles Response regulatory domain profile. 649 782 IPR001789 GO:0000160
Csa05g00994 953 PANTHER HISTIDINE KINASE 4 1 948 - -
Csa05g00994 953 Gene3D - 302 392 - -
Csa05g00994 953 Coils Coil 379 399 - -
Csa05g00994 953 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 441 621 IPR003594 -
Csa05g00994 953 Gene3D - 7 59 - -
Csa05g00994 953 Gene3D - 393 627 IPR036890 -
Csa05g00994 953 SMART HisKA_10 329 394 IPR003661 GO:0000155|GO:0007165
Csa05g00994 953 ProSiteProfiles Histidine kinase domain profile. 336 624 IPR005467 -
Csa05g00994 953 SMART REC_2 808 941 IPR001789 GO:0000160
Csa05g00994 953 Pfam His Kinase A (phospho-acceptor) domain 329 394 IPR003661 GO:0000155|GO:0007165
Csa05g00994 953 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 383 619 IPR036890 -
Csa05g00994 953 SMART HKATPase_4 441 624 IPR003594 -
Csa05g00994 953 SUPERFAMILY CheY-like 807 946 IPR011006 -
Csa05g00994 953 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 315 395 IPR036097 GO:0000155|GO:0007165
Csa05g00994 953 CDD HisKA 329 390 IPR003661 GO:0000155|GO:0007165
Csa05g00994 953 Gene3D CHASE domain 60 275 IPR042240 -
Csa05g00994 953 SUPERFAMILY CheY-like 645 783 IPR011006 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa05g01966 Csa05g00994 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00070 Csa-Chr3:579638 Csa05g00994 Csa-Chr5:9280299 2.20E-15 dispersed
Csa04g02603 Csa-Chr4:25521271 Csa05g00994 Csa-Chr5:9280299 9.23E-60 dispersed
Csa05g00994 Csa-Chr5:9280299 Csa05g01966 Csa-Chr5:23031938 0 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31726 PF02518 HATPase_c 2.40E-31 CL0025 Csa TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00994 K14489 - csv:101204531 1869.74