Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01000 ATGGAAGCAGAAGGAGGATTAAGCAACAAAGGTAGTAATCACAAGGATTCTAATGGCCTTATTGATGCTTTGTTTTCTTGGGACTTTAACAATGTCTTCAATCAAAACATCTACAAACCCAAGGTAAGAAAGATCCCAAAATCATTTGAAACAGAGGAGCAATATAAAGGCTCGTATATATTCCCTTTGTTAGAAGAAACAAGAGCTGAGTTGTGTTCTAATTTGAAGACAATTCAAAAAGCACCTTTCTCACAAGTGATTTCCATTGAAACTTCAAACACAAAAAAGGACAAAATCTTGTTCAATGTTAATGTTAGCTCTTGGAGAAACACTTATGGTGGGAAGGGACAACAACCATACAAATCACTTCCAGGGGATTTTTTTGTCATTTTGGACGTTGACCCTCAAACTATTACAAGTGATTATTTGGAGAAAAGCTCAAAGCTTAATTGGGCTTTTGCTTGGTTAGGACAAGTTAATGATAATAATACCCCTACTCATCTCAAGCTTCATATTTCCAACAGCATGGATCAACTTAAATCAACACCACTTTTCATTGTTTTTCTTATGAATCTGACTACCAACTTGAGGATATGGAAGACGTTACAATGTTCTTCTAGTGGCGGGATCGTCAAGCACGTTTTGGGAACTATGTCAATGGATAATAAAACTTGCAAACAGTGCAATAATCAAACTGATGGAGAAGATTCAACTGAAGATATGGCAACACTAAGGTTAGCATCTTTATCACTGAATGAATCCCAAAGAGTAGCAATAGAAAGTTGCATTAGAAAGGTTAAATGCCAACACAAACCTTCAATAGAGCTTATATGGGGTCCACCAGGGACAGGCAAAACCAAAACCACAAGTATATTACTTTGGAAAATCTTAGCAATAAATCACCAGATTAGGACTCTTGCTTGTGCACCCACAAATGTTGCCATTACAAATCTTGCCTCTCAAGTTCTGAAGTTACTTAAACATGATTCCCTAAGTAGAAATGCCATCTTTTGCCCTTTGGGAGAACTGCTCTTGTTTGGGAACAAAGATAGGCTTAAATTTGATTATTCTCATCAATTGGAAGACATTTATTTGGACCGTAGGGTTGAAAAACTTTTCAAGTGTTTAGGACAATATGGTTTGAAGTTTCAAATATCATCAATGATAGGGATTTTCCAAGAGAACAAGCTATCAAAACTGAAGAGAATGTTCAAATCAAATGTTTCATCACTCTTAGAATGTGTTCATATTTTCACAACTCATATACCTCAGCAAGTGATTATGGAGCATAATTGGAAAAAATTGGAGATTCTTGTTGGGTTTATTTGTGACATTGGGACACTCTTGAGTAAAAATAATTATAATTATGATGATGATGATACGATGGGAGAAGCTTTGATTGATTTGAAGTGTCATTTTTTGTTGGTTTTGAGGACACTTTTGGTTTCTCTTGATGAAATTGAAGTTCCAAGTAAATTGAGCAAGAATTCAATTGAGAAGTTCTGTTTTCAGAAAGCTTCATTGATTTTTAGCACAACATCAAATTCCTTCAAATTAAACTCAGTGAAAAAGAATTCACTGAATTTGGTTGTTGTTGATGAAGCTGCACAATTGAAGGAATGTGAATCCCTTATACCTTTGCAACTTCCACATATAAGCCATGCTATTCTTGTTGGCGATGAGTTCCAATTACCAGCAACAGTAAAGAGCAAGATTATGGATGCTTCCATTGTAATGAATAAAGAGTATGAAAAAGAATACCTTCCAAGTCCTCTATTTGGTCCATATTCTTTTATCAATGTTTGTGGTGGAGAAGAAGAAAGCAATGGTGATGGACAAAGCAAGAAGAATATGGTTGAGGTAACTGTTGTTACCCAAATTATCCAAATGCTTTACAAAGCATGGTGCAAAAACAAGAAAGATATTAGCATTGGGATAATATCTCCTTACAATGCACAAGTTTCATCAATTCAAGAAAAACTTGGAAGAAAATATGAGAAGAAGAATAACGAAGGATTTGGAGTAAAAGTAAAGTCAATTGATGGTTTTCAAGGTGGTGAAGAGGATGTAATCATAATATCTACAGTTAGATCCAACAATGGACACAACATTGGATTCCTCTCAAATAAACAAAGAACCAATGTTGCTCTCACAAGAGCAAGGTTCTGCCTTTGGATCGTGGGAGATGCAAAAACTTTAGGAAAGAGCAATTCAGAGTGGAGAGATGTTATTGATGATGCCAAGACTCGCCGATGTTTCTTTAATGTTGAGGAGAACAAAGAGTTGGCAAATGAAATGAGAATGATGAAAACTTGGCAAATGTCTGATATCAAACAGGAGATCCTCAAACTTGATAATATTTACAACAGTAATCACGTCTATGGAAGAGTTTGA 2394 35.38 MEAEGGLSNKGSNHKDSNGLIDALFSWDFNNVFNQNIYKPKVRKIPKSFETEEQYKGSYIFPLLEETRAELCSNLKTIQKAPFSQVISIETSNTKKDKILFNVNVSSWRNTYGGKGQQPYKSLPGDFFVILDVDPQTITSDYLEKSSKLNWAFAWLGQVNDNNTPTHLKLHISNSMDQLKSTPLFIVFLMNLTTNLRIWKTLQCSSSGGIVKHVLGTMSMDNKTCKQCNNQTDGEDSTEDMATLRLASLSLNESQRVAIESCIRKVKCQHKPSIELIWGPPGTGKTKTTSILLWKILAINHQIRTLACAPTNVAITNLASQVLKLLKHDSLSRNAIFCPLGELLLFGNKDRLKFDYSHQLEDIYLDRRVEKLFKCLGQYGLKFQISSMIGIFQENKLSKLKRMFKSNVSSLLECVHIFTTHIPQQVIMEHNWKKLEILVGFICDIGTLLSKNNYNYDDDDTMGEALIDLKCHFLLVLRTLLVSLDEIEVPSKLSKNSIEKFCFQKASLIFSTTSNSFKLNSVKKNSLNLVVVDEAAQLKECESLIPLQLPHISHAILVGDEFQLPATVKSKIMDASIVMNKEYEKEYLPSPLFGPYSFINVCGGEEESNGDGQSKKNMVEVTVVTQIIQMLYKAWCKNKKDISIGIISPYNAQVSSIQEKLGRKYEKKNNEGFGVKVKSIDGFQGGEEDVIIISTVRSNNGHNIGFLSNKQRTNVALTRARFCLWIVGDAKTLGKSNSEWRDVIDDAKTRRCFFNVEENKELANEMRMMKTWQMSDIKQEILKLDNIYNSNHVYGRV* 798
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9430044 9434353 + CsaV3_5G013060.1 Csa05g01000 529387

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01000 797 PANTHER DNA2/NAM7 HELICASE FAMILY 570 769 IPR045055 -
Csa05g01000 797 CDD SF1_C_Upf1 576 748 IPR041679 -
Csa05g01000 797 Gene3D - 217 390 IPR027417 -
Csa05g01000 797 PANTHER OS04G0582700 PROTEIN 570 769 - -
Csa05g01000 797 PANTHER OS04G0582700 PROTEIN 12 574 - -
Csa05g01000 797 Pfam AAA domain 267 566 - -
Csa05g01000 797 Pfam Domain of unknown function (DUF6469) 82 204 IPR045529 -
Csa05g01000 797 Pfam AAA domain 569 730 IPR041679 -
Csa05g01000 797 PANTHER DNA2/NAM7 HELICASE FAMILY 12 574 IPR045055 -
Csa05g01000 797 Gene3D - 567 769 IPR027417 -
Csa05g01000 797 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 250 754 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01000 - - - csv:116403825 1130.93
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00981 Csa-Chr5:8991242 Csa05g01000 Csa-Chr5:9430044 0 dispersed
Csa05g01000 Csa-Chr5:9430044 Csa07g01347 Csa-Chr7:13372831 1.47E-172 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g484 . . Bda01g01801 . Bpe13g01013 . . . Cmo04g01095 . Cma04g01018 . Car04g00953 Car04g00067 Sed06g0165 . Cpe01g01834 Bhi07g00378 Tan04g1527 Cmetu10g0773 Lac13g1367 Hepe01g0572 . . Cla07g00560 Cam07g0588 Cec07g0655 Cco07g0624 Clacu07g0591 Cmu07g0626 Cre07g0966 . . Cone6ag0373 Cone9ag0402 Lsi04g01110 . . Cme10g01607 . Blo11g00970 Bda07g01755 . . . Bma01g00483 . . . Cmo15g01022 . Cma15g00975 . Car15g00921 Cpe13g00352 . Bhi12g00934 . . . . . . Cla01g00633 Cam01g0661 Cec01g0653 Cco01g0679 Clacu01g0649 Cmu01g0623 Cre09g1881 Lsi09g00682 Csa05g01000 Chy09g00509 Cme09g01349
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008680 0 1 1 0 0 1 2 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 3 4 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g01000 Csa_Chr05 FPKM 5.400676 7.717578 16.0418 15.527617 21.817196 20.784124 20.04896 22.596651 20.032816 21.731546