Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01008 ATGAGAGTGGTTCCAGTGGTGACTTTGAGCAATGGCCAGTTGATGCCAGTGATCGGGATGGGGACGATGTCCATGGTCGGCCCAGAGGCGACAAAACTTGCCGTAGTGGAAGCAGTTAGAGCTGGATACCGCCATTTTGATACGTCCTATGCATACGGATCAGAGAAGGCCCTTGGAGAGGGGATTCGGGAGGCTTTGGAACTTGGACTTATAGAGTCAAGAGATGAAGTGTTCATAACCACTAAGTTAGCCTGTGGTTTTGCTGATCCCTCCCTTGTTCTTGATGGAATTAAGGCCAGTCTAAGGAATTTGGGAATGGAATATGTTGATATGTATTTGATTCACATTCCATTGAAGTTGAATCCTGAAGTAAGGAAAGTCCCAGTTGCAAAGGAGGATATTTCTGAAATTGATCTCGAAGGAGTTTGGGATCAAATGGAATGCTGCCAAAACCTTGGTCTCACCAAAGCTATTGGTGTCAGTAATTTCTCTCCCAAAAGGCTTCAACAACTTCTTTCCTTTGCAAAAATACCCCCACTTCTGAATCAAGTGGAGATGAGTCCACTTTGGCATCAGAATAAATTGAGAGAGTTTTGTAAAGCAAAGGACATTCATGTAACTGCCTATTCTCCTCTGGGGGCAGTTGGGACACATTGGGGACACAACAAAGTTGTGGACTCTGATGTTATTACTCAAATTGCAAAGGCCAAAGGGAAAACAACTGCTCAGATTGCATTGAGATGGGTTTATGAGCAAGGAGTGAGCATAGTGGCAAAGAGCTTTGACAAAGAAAGAATGAGAGAGAACATCGACATTTTTGATTGGTCATTGAGTGAAGATGAATCAGATAAGATTGGCCAACTTCCTCAACACAAAGCTGTTGTGTTTGCCAATGTTTATGGCCAACATGATGTGGTTCTTCATCTTGATGCTGAGCTTTGA 942 43.42 MRVVPVVTLSNGQLMPVIGMGTMSMVGPEATKLAVVEAVRAGYRHFDTSYAYGSEKALGEGIREALELGLIESRDEVFITTKLACGFADPSLVLDGIKASLRNLGMEYVDMYLIHIPLKLNPEVRKVPVAKEDISEIDLEGVWDQMECCQNLGLTKAIGVSNFSPKRLQQLLSFAKIPPLLNQVEMSPLWHQNKLREFCKAKDIHVTAYSPLGAVGTHWGHNKVVDSDVITQIAKAKGKTTAQIALRWVYEQGVSIVAKSFDKERMRENIDIFDWSLSEDESDKIGQLPQHKAVVFANVYGQHDVVLHLDAEL* 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9518646 9520478 - CsaV3_5G013140.1 Csa05g01008 529395

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01008 313 ProSitePatterns Aldo/keto reductase family signature 1. 42 59 IPR018170 GO:0016491
Csa05g01008 313 PANTHER D-GALACTURONATE REDUCTASE-LIKE 10 312 - -
Csa05g01008 313 Pfam Aldo/keto reductase family 18 285 IPR023210 -
Csa05g01008 313 SUPERFAMILY NAD(P)-linked oxidoreductase 6 300 IPR036812 -
Csa05g01008 313 Gene3D - 2 309 IPR036812 -
Csa05g01008 313 ProSitePatterns Aldo/keto reductase family signature 2. 146 163 IPR018170 GO:0016491
Csa05g01008 313 PIRSF AKR 2 308 IPR020471 GO:0016491
Csa05g01008 313 CDD AKR_AKR4A_4B 11 290 IPR044497 GO:0016616
Csa05g01008 313 ProSitePatterns Aldo/keto reductase family putative active site signature. 257 272 IPR018170 GO:0016491
Csa05g01008 313 PRINTS Aldo-keto reductase signature 38 62 IPR020471 GO:0016491
Csa05g01008 313 PRINTS Aldo-keto reductase signature 99 117 IPR020471 GO:0016491
Csa05g01008 313 PRINTS Aldo-keto reductase signature 146 163 IPR020471 GO:0016491
Csa05g01008 313 PRINTS Aldo-keto reductase signature 180 209 IPR020471 GO:0016491
Csa05g01008 313 PRINTS Aldo-keto reductase signature 224 248 IPR020471 GO:0016491
Csa05g01008 313 PANTHER ALDO/KETO REDUCTASE 10 312 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01008 K19642 GALUR; D-galacturonate reductase [EC:1.1.1.365] - csv:101206206 626.32
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00842 Csa-Chr2:7703836 Csa05g01008 Csa-Chr5:9518646 6.97E-160 dispersed
Csa05g01008 Csa-Chr5:9518646 Csa04g01526 Csa-Chr4:14890252 9.38E-66 dispersed
Csa05g01008 Csa-Chr5:9518646 Csa05g01009 Csa-Chr5:9534067 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1075 Blo01g00385 . . . . . . . . . . . . . . . . Bhi07g00153 . . . Hepe01g0358 . . . . . . . . . . . . . . . Chy10g00095 Cme10g01125 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01008 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003041 0 2 2 1 1 2 1 2 2 3 2 2 1 2 3 1 2 2 1 2 3 1 3 2 2 2 1 1 1 3 53
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g01008 Csa_Chr05 FPKM 17.755239 19.945801 14.912293 13.519625 20.438757 19.091438 21.748127 15.207766 13.817092 15.237386