Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01011 ATGGTTCCAGGCATCATAATGCACCAGCAATCCTCTTCTGCAGTTTCTCCACACCATATCAATCCTCCGCCTTCCTCTCTTAGGTCACCTTCATCCACACCTCCCGCTGCCCACTCTCCACTGCCTCTCACCACTCACGTCTCCAATTCCCACCGGGAGCCATGCGACCATGTTGCCGGACCAGTGCTGCAATCCGCCGGTGATTCTGCTGTAGCTATGGCTTGCCCACTCGCCCGGGTCCGCTTGTCTGATATTGCCCCCTACGACGGTGCGCCTGCGGGGTCCTACGTGAGGGCGGTTGAGGCTTTGTCCGGATCCTTGACGAGATATAATGCGGCTGTGATTGAATTGGAGAATGAAGCTGCTGCTCTCACTCGTTGCGGTCTTGAAGCGGCTAGGTTGTTTTTCAAAAGTAGAGCGCAGAGTGGAGGAAAGGGGCGAAGTGTTTATATGTATAGAGCTGGAAGAGCAGTGGAAGATTGGGACTCTTGTCCTCCGTGTATGGCTGATATTTTTAGATGTATGGGTAAAGCAGCTCGAGCTGCCTTGTGTGCAATAGCTAGGCATCTTCGTTTGAGAAGCGATGTTTTCAATAATTTGCTCGATGACACTCCACTTCCTGCTACTGATGTGTCCTCATCAGTGCTTGTTGCAATGCACTTGCATAATAGCTCTTTGCACAATTGCAAGGGTTCTATTGGAGGAGGAAAGTCAGCAATGAATGTTGAGGTTGAGAAGGGGTTATTGACATTGTTTTCCTCAGACAATCCTGGTTTACAGGTTTGTGATCCCAATGGTCGCTGGTACCTAGCAGACACTGTCTTGGCACCTGGAGATCTGTTACTGATTACTGGAAAGGCACTTAGCCATGCTACAGCTGGCCTTCGGCCTGCTGCATCATATAGAGTTGCTTCTGATCATTCCTTGGGCTCAAATTGTGTTGGGAGGACTTCCCTTGCATTTAGACTCATGCCCCAGACAAATGCCATACTAGACTGTTCTCCCATTGCAGCAGCTGGTCATGTCATTCCCCAAAGATATGGTCCAGTCTCTGTTAGCCAATTCATGGATGATCTTTCTGCTGAGGAAGATGTATTATGCACTCATCTGGATAAGGATAACAATTGTATAGCTCGAAATGATCAAAACAAGGAAGCCTCGCTAAGAAGTGTTCTCTCAGATCCACTATCAGGTGCATTCCTTGAGGATGCGACGTTTGTTTCATGTGGACATTCATTTGGTGGTCTCATGCTGAGGAGAGTCATTGAGACGTCAAGGTGCACCATTTGCAACTCAGAAATTGATGCTGGGTCTTTGATTCCTAATCTAGCACTTAGAGCCGCAGCCTCAGCTGTGAAGCATGAAGATGATAGGAGGCTATTCCACAATGCTGCATTGAGGAAGCGTAGGAAAGAAATGGGCGACCATATGGATCCAATGAGAAGATTAAACAGGGAAAATGGTGATCTTGCCATCGATGATGGCATCCATCGAGGAGTGCAGTATCCTTTTGCAGAAAATGAAAAGGTTCTAATTAAGGGAAACAGGAGAACACCAGAAAAATTTGTTGGAAAAGAAGCAGTCATTACATCCCAGTGTCTCAATGGCTGGTATTTGCTAAAAATCATTGGTACTGGAGAGAATGTTCGGTTGCAATATCGATCTCTTAGGAAGATCCTTAACACGACACCAGCTAATGACAATAGCTGTCCTCCACAGCCACTTCAGCACAGTTGCTCATAG 1743 47.33 MVPGIIMHQQSSSAVSPHHINPPPSSLRSPSSTPPAAHSPLPLTTHVSNSHREPCDHVAGPVLQSAGDSAVAMACPLARVRLSDIAPYDGAPAGSYVRAVEALSGSLTRYNAAVIELENEAAALTRCGLEAARLFFKSRAQSGGKGRSVYMYRAGRAVEDWDSCPPCMADIFRCMGKAARAALCAIARHLRLRSDVFNNLLDDTPLPATDVSSSVLVAMHLHNSSLHNCKGSIGGGKSAMNVEVEKGLLTLFSSDNPGLQVCDPNGRWYLADTVLAPGDLLLITGKALSHATAGLRPAASYRVASDHSLGSNCVGRTSLAFRLMPQTNAILDCSPIAAAGHVIPQRYGPVSVSQFMDDLSAEEDVLCTHLDKDNNCIARNDQNKEASLRSVLSDPLSGAFLEDATFVSCGHSFGGLMLRRVIETSRCTICNSEIDAGSLIPNLALRAAASAVKHEDDRRLFHNAALRKRRKEMGDHMDPMRRLNRENGDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGTGENVRLQYRSLRKILNTTPANDNSCPPQPLQHSCS* 581
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9559126 9583343 + CsaV3_5G013170.1 Csa05g01011 529398

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01011 580 MobiDBLite consensus disorder prediction 31 49 - -
Csa05g01011 580 MobiDBLite consensus disorder prediction 1 51 - -
Csa05g01011 580 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 68 578 - -
Csa05g01011 580 Gene3D - 101 364 IPR027443 -
Csa05g01011 580 SUPERFAMILY RING/U-box 388 455 - -
Csa05g01011 580 Coils Coil 100 120 - -
Csa05g01011 580 SUPERFAMILY Clavaminate synthase-like 161 356 - -
Csa05g01011 580 MobiDBLite consensus disorder prediction 1 22 - -
Csa05g01011 580 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 385 456 IPR013083 -
Csa05g01011 580 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 68 578 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01011 - - - csv:101206682 1135.17
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02163 Csa-Chr4:22457232 Csa05g01011 Csa-Chr5:9559126 9.72E-40 dispersed
Csa05g00898 Csa-Chr5:6968132 Csa05g01011 Csa-Chr5:9559126 2.89E-43 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1044 . . . . . . . . . . . . . . . . . Bhi07g00139 . . Lac13g1653 . . . . . . . . . . . . . . . . Chy10g00104 Cme10g01121 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01011 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002937 2 6 1 0 1 1 2 1 1 2 2 1 2 2 2 1 1 3 2 1 2 2 2 2 3 2 2 2 2 1 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g01011 Csa_Chr05 FPKM 6.408805 7.285543 7.83481 7.415697 11.292636 11.767157 10.354712 5.27267 4.020712 3.214992