Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01015 ATGAATACAGCAATTGGAAGCCACATCCTTTCTCAAATTCTTGATTCTCCACTCCCCGTTCCATTTCGATCCCTCCGATTATCCTCAAAGATTATGACGAGCGTAACGTTTGGCCACCAGAGTAATTGGTCGCCCGGGATTGGGATTCAAGAGCATCTAGGTAGAACAAAGATTTCTCGGGTGGATTGTTGTCCATTTCTTCCTTCCACCCACCATGGGAATCATGTTGCTTACTGTCGCCGGAGAACTGGACGGCAACTCAGACCTGTTTTTGCCGGTTCCATCGACGGTGCCATGGATCCCGATGACCCCGATCATCGGATTAATGACAGTGAGAGTCCTAAAACAGAAAATGAAGGGATGAACTTCGAAATGCTTAGGGAGAACTTGGAGAGATCGGTTGGAACAGATGATTCCAGATTTAGTGGGATTGATCTGGCTACTCTTATCAGAAACAAGTATGGCAAGTCTTATGATGTTCAACTAATAAAGAAGGAGTTCATGGGACGGAATCTTCTTGCTTTAAATGTCATGTGGAAATACAGAGAGCAGGAAAATGAGCACTTCACAGAGCATCACTGCCCTAAAAATTTGGGAGATCATTTCACATTTTAA 615 44.23 MNTAIGSHILSQILDSPLPVPFRSLRLSSKIMTSVTFGHQSNWSPGIGIQEHLGRTKISRVDCCPFLPSTHHGNHVAYCRRRTGRQLRPVFAGSIDGAMDPDDPDHRINDSESPKTENEGMNFEMLRENLERSVGTDDSRFSGIDLATLIRNKYGKSYDVQLIKKEFMGRNLLALNVMWKYREQENEHFTEHHCPKNLGDHFTF* 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9648412 9654068 - CsaV3_5G013210.1 Csa05g01015 529402

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01015 204 PANTHER SLR0598 PROTEIN 32 201 IPR021420 -
Csa05g01015 204 MobiDBLite consensus disorder prediction 95 118 - -
Csa05g01015 204 MobiDBLite consensus disorder prediction 99 114 - -
Csa05g01015 204 Pfam Domain of unknown function (DUF3067) 145 195 IPR021420 -
Csa05g01015 204 Gene3D Protein of unknown function DUF3067 141 200 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01015 - - - csv:101207332 381.719
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1043 . . . . . . . . . . . . . . Sed06g0251 . . Bhi07g00129 Tan04g1677 Cmetu10g0260 . . . . . . . . . . . . . . . . . Chy10g00107 Cme10g01116 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01015 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007167 2 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 3 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g01015 Csa_Chr05 FPKM 20.846046 22.768736 23.34248 22.176838 13.542983 15.306528 15.872582 35.405643 36.523849 34.287003