Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01019 ATGGCTTCTTCCTCCGCTTCACTCTCATCCAAAACCAGAACCCTAATCGACATCTTCCAGCCAGCGCTTTCCAAACGCTTAAAAACCTCACAGACGTTGAAAACCTTAGCAACCAACGACGACAAATGCGATTCAGACCTCACATTGGCTTCCTCTTCCGCTGACATTTCTGCCTCCCAGATATCCCGCATGGAAACCAACAAATGGATCGCCAGATCCAAGCGCAATCTCAAAACTTGCTCAGATAGGGTTTCTAAATGGGAGAATGGATGTGTGAAGTTGGAGGAGCTTTTGGTGGAGGAGACATGGTTTGAAGCTCTTCCTGGAGAGTTCCAGAAGCCCTATGCTCTTAATCTTTGCAAATTTGTACAGACTGAAATTTGTAGTAGTGGTGTCCCTATTTATCCTCCTCCTTCTTTGATCTTTAATGCTCTGAATTCTACCCCTTTTGATAGGGTCAAAGTTGTTATTCTTGGCCAAGATCCTTATCATGGGCCTGGTCAAGCTATGGGTCTTTCATTTTCTGTTCCTGAGGGAGTTAAAATCCCATCTAGTCTTCTCAACATATTCAAGGAACTGAGGGATGATCTTGGTTGTTCCATCCCATCCCATGGAAATCTCGGGAAATGGGCCGTTCAGGGAGTCTTGTTGCTTAATGCTGTTCTCTCAGTTCGAAAGCATCAAGCGAACTCTCACGCTAAGAGAGGATGGGAACAATTTACTGATGCTGTCATCAAGACAATATCACAAAAGAAGGAAGGGATTATCTTTCTACTTTGGGGAAACTCCGCTCAAGCGAAATTGAGGTTAATTGATGAGAAAAAGCATCACATTCTCAAAGCAGCGCATCCTTCTGGTTTGTCTGCTAACAGAGGCTTCTTTGGTTGCAGGCATTTTTCTCGAACAAACATACTACTCAAGGAAATGGGTACTGCTTCCATAGATTGGCAACTTTGA 957 43.99 MASSSASLSSKTRTLIDIFQPALSKRLKTSQTLKTLATNDDKCDSDLTLASSSADISASQISRMETNKWIARSKRNLKTCSDRVSKWENGCVKLEELLVEETWFEALPGEFQKPYALNLCKFVQTEICSSGVPIYPPPSLIFNALNSTPFDRVKVVILGQDPYHGPGQAMGLSFSVPEGVKIPSSLLNIFKELRDDLGCSIPSHGNLGKWAVQGVLLLNAVLSVRKHQANSHAKRGWEQFTDAVIKTISQKKEGIIFLLWGNSAQAKLRLIDEKKHHILKAAHPSGLSANRGFFGCRHFSRTNILLKEMGTASIDWQL* 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9700050 9705858 + CsaV3_5G013250.1 Csa05g01019 529406

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01019 318 Gene3D - 79 318 IPR036895 -
Csa05g01019 318 CDD UDG-F1-like 115 316 IPR002043 GO:0004844|GO:0006281|GO:0006284
Csa05g01019 318 Hamap Uracil-DNA glycosylase [ung]. 100 317 IPR002043 GO:0004844|GO:0006281|GO:0006284
Csa05g01019 318 ProSitePatterns Uracil-DNA glycosylase signature. 154 163 IPR018085 GO:0006281|GO:0016799
Csa05g01019 318 SUPERFAMILY Uracil-DNA glycosylase-like 98 318 IPR036895 -
Csa05g01019 318 PANTHER URACIL-DNA GLYCOSYLASE 34 318 IPR002043 GO:0004844|GO:0006281|GO:0006284
Csa05g01019 318 TIGRFAM ung: uracil-DNA glycosylase 101 310 IPR002043 GO:0004844|GO:0006281|GO:0006284
Csa05g01019 318 Pfam Uracil DNA glycosylase superfamily 151 305 IPR005122 -
Csa05g01019 318 SMART UDG_2 146 306 IPR005122 -
Csa05g01019 318 SMART UDG_2_a 146 306 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01019 K03648 UNG, UDG; uracil-DNA glycosylase [EC:3.2.2.27] - csv:101207581 618.616
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1042 . . . . . . . . . . . . . . Sed04g3062 . . Bhi07g00120 Tan04g1675 Cmetu10g0133 Lac13g1644 Hepe01g0395 . . . . . . . . . . . . . . . Chy10g00117 Cme10g01102 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01019 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011117 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g01019 Csa_Chr05 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.58412