Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01020 ATGGGAATTGTTCCTAATCTCACTTCGGATCAACTCCAATTCTTTCATTCTCACGGTTATCTTGTGATTGAATCATTCGCCACTCCTGATGAAATTCATGCCATGAGAAACCGGATGGAACACTTGCTTCATGGATTTGACTGCTCCACTTCCTCTGTTTTCTCTACTGTTAATCAGCAGCAGTCGACCGACGATTACTTCCTTCAAAGCGCTGAGAATATTTCCTTCTTTTTTGAGGAAAAAGCATTTGGAGAGGATGGAAACTTGAAACAAGAAAAGGAGCTCTCAATTAACAAAGTTGGTCATGCATTACATGAGTTTGACCCAGTTTTCAAAAGCTTCTCCGACTCTGAGAAGTTTTCAGGTTTATTGTTGTCATTGGGATACAAGAGGCCGATAGCCATTCAGTCTATGTACATATTTAAGCAACCAGGTATTGGAGGTGAAGTAGTGCCTCACCAGGATAACTCGTTTCTTTACACTGAACCAACTACATGCACAGGGCTGTGGCTGGCACTTGAAGATGCAAATACGACAAATGGCTGTCTTTGGGCTATTCCTGGATCACATAAAAATGGACTTGTTAGAAGGTTTCTTAGAGGCGACAAAGGAGTGTACTTTGATCAGCCTTCTCCTACTTACAACAAGAAAGATTTTGTGCCTATTGAAGTGAAAGCTGGATCTTTGGTTGTAATTCATGGAGACGTTATTCATCAAAGCTTTGAGAATCAGTCTCCAAAATCAAGACATGCGTATAGCCTGCACGTGGTTGATACAGAAGGTTGTGTATGGGCTCAAGATAATTGGATTAGGAGAAAAGTGCAACCTGAGCCTCTATACGAATCTTGA 849 41.22 MGIVPNLTSDQLQFFHSHGYLVIESFATPDEIHAMRNRMEHLLHGFDCSTSSVFSTVNQQQSTDDYFLQSAENISFFFEEKAFGEDGNLKQEKELSINKVGHALHEFDPVFKSFSDSEKFSGLLLSLGYKRPIAIQSMYIFKQPGIGGEVVPHQDNSFLYTEPTTCTGLWLALEDANTTNGCLWAIPGSHKNGLVRRFLRGDKGVYFDQPSPTYNKKDFVPIEVKAGSLVVIHGDVIHQSFENQSPKSRHAYSLHVVDTEGCVWAQDNWIRRKVQPEPLYES* 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9706836 9716154 - CsaV3_5G013260.1 Csa05g01020 529407

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01020 282 Gene3D q2cbj1_9rhob like domain 5 280 - -
Csa05g01020 282 PANTHER PHYTANOYL-COA DIOXYGENASE DOMAIN-CONTAINING PROTEIN 1 6 277 - -
Csa05g01020 282 Pfam Phytanoyl-CoA dioxygenase (PhyH) 15 251 IPR008775 -
Csa05g01020 282 PANTHER PHYTANOYL-COA DIOXYGENASE DOMAIN CONTAINING 1 6 277 - -
Csa05g01020 282 SUPERFAMILY Clavaminate synthase-like 7 273 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01020 K00477 PHYH; phytanoyl-CoA hydroxylase [EC:1.14.11.18] - csv:101218922 586.26
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g434 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01020 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011245 1 2 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 2 1 2 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g01020 Csa_Chr05 FPKM 1.488856 0.881585 0.43063 0.493607 1.308041 0.984454 1.49254 0.132836 0.078419 0.079316