Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01021 ATGGGAGACGACGACAATAATAATAATAACAATAGAAATGGGAGTAGCAAGCAGTCGGAGCCGCCCCGGGGTCCACCGGAGCACTCTGTTGAAATTATTCATCCCGTGGTTCCGCCTCCCAGGAGAAGCTGGTTGGAGAAGATCAGGAACCGCCTAAAGGAAATCTTTTTTCCCGACGATCCTCTCCGCCAGTTCAAGGGTCAATCTCCGGTCAGAAAGTTGGTTCTTGGAGCTCAATATATATTCCCAATTCTTGAATGGGGTTCTCATTATAATTTTTCCCTTTTTAAATCTGATGTTGTTGCTGGTCTCACCATTGCTAGCTTGGCCATTCCTCAGGGAATAAGCTATGCTAAGCTTGCTAATTTGCCACCCATTGTTGGACTTTATTCAAGCTTTGTTCCACCATTAGTATATGCTGTTCTTGGAAGCTCAAGAGATCTAGCAGTTGGACCTGTTTCAATTGCATCATTAATATTAGGTTCAATGTTGAGACAAGAAGTTTCTCCCATCAAAGATCCCATTCTTTTTCTTCAACTTGGCTTCACTGCCACCTTCTTCGCCGGTCTCTTTCAGGCTTCCCTCGGCTTTCTCAGACTTGGGTTTATAATAGATTTTCTATCCAAGGCCACTTTGATTGGATTCATGGCAGGAGCAGCCATTATTGTGTCTTTACAGCAACTTAAAGGCTTGCTTGGAATCACTCATTTCACTAAACAAATGGGTTTGATTCCTGTTTTGTCCTCAGTTTTTCATCACACTCATGAGTGGTCATGGCAGACTATTCTGATGGGCTTTTGTTTCCTTCTCTTCCTCCTCCTCACAAGACACATTAGCATGAAAAGGCCAAAGTTATTCTGGGTATCAGCTGGAGCTCCTTTAGTATCTGTCATTCTTTCAACCATCTTGGTTTTTGCATTCAAGGCCGATCGCCATGGCATCAGTATTATAGGAAAATTGGAAGAAGGATTGAACCCTCCTTCATTGAACATGCTTCGTTTTGAAGGATCACACCTTGGTCTTGTTATTAAGACTGGCCTCGTCACTGGCATCATCTCTCTTACGGAAGGAATCGCAGTAGGGCGAACTTTTGCAGCTATAAAAGACTATCGTGTGGATGGTAACAAGGAAATGATTGCAATCGGTCTCATGAACGTGGTTGGCTCTTTCACGTCTTGCTACGTCACAACAGGTGCGTTTTCAAGGTCAGCGGTGAACCATAATGCAGGGGCCAAAACCGCAGTGTCCAATATCGTAATGTCTGTGACGATAATGGTAACCTTGTTGTTTCTGATGCCTCTTTTTCAATACACTCCCAATCTCGTGTTGGCTGCCATCATTGTCACCGCCGTCATCGGCCTTATCGACGTCCCAGCTGCGTATGCCATTTGGAAGGTCGACAAGTTCGACTTTGTTGTCATGCTTTGTGCCTTCTTCGGAGTCATTCTCATCTCTGTTCAACATGGTCTCGCCATTGCTGTTGGGATATCAATTTTCAAGATCATCCTACAAATCACAAGGCCAAAAACAGCGATGTTGGGGAACATAGGTGGAACAGATATATATAGAAACATTCACCAATACAAGGATGCAATGAGCATTCAAGGCTTTCTCATTCTGAGCATTGAAGCTCCGATCAACTTTGCCAACACCACTTATCTCAATGAAAGGATTTTGAGATGGATCGAGGATTATGAAGCTGGTCAAGATCATCTTAAGAAGGAGGGCTCTGACCTTCAGTTCGTGGTTTTAGAATTATCTGCTGTGAGTGCTATAGACACTAGTGGAGTCCTACTCTTCAAAGATCTAAGGAGAGCATTGGAAAAGAAGGGTGTTGAGCTTGTGTTGGTGAACCCAATGGGTGAACTATTGGAGAAGTTGCAAAAAGCAGATGAAAATCAAGAGATTTTGAGGCCAAATAATGTTTTCTTAACTGTGGGAGAGGCCGTTGCTTTCTTATCAGCAACAATGAAGCGACAATCCTCAACTATATAG 1995 43.46 MGDDDNNNNNNRNGSSKQSEPPRGPPEHSVEIIHPVVPPPRRSWLEKIRNRLKEIFFPDDPLRQFKGQSPVRKLVLGAQYIFPILEWGSHYNFSLFKSDVVAGLTIASLAIPQGISYAKLANLPPIVGLYSSFVPPLVYAVLGSSRDLAVGPVSIASLILGSMLRQEVSPIKDPILFLQLGFTATFFAGLFQASLGFLRLGFIIDFLSKATLIGFMAGAAIIVSLQQLKGLLGITHFTKQMGLIPVLSSVFHHTHEWSWQTILMGFCFLLFLLLTRHISMKRPKLFWVSAGAPLVSVILSTILVFAFKADRHGISIIGKLEEGLNPPSLNMLRFEGSHLGLVIKTGLVTGIISLTEGIAVGRTFAAIKDYRVDGNKEMIAIGLMNVVGSFTSCYVTTGAFSRSAVNHNAGAKTAVSNIVMSVTIMVTLLFLMPLFQYTPNLVLAAIIVTAVIGLIDVPAAYAIWKVDKFDFVVMLCAFFGVILISVQHGLAIAVGISIFKIILQITRPKTAMLGNIGGTDIYRNIHQYKDAMSIQGFLILSIEAPINFANTTYLNERILRWIEDYEAGQDHLKKEGSDLQFVVLELSAVSAIDTSGVLLFKDLRRALEKKGVELVLVNPMGELLEKLQKADENQEILRPNNVFLTVGEAVAFLSATMKRQSSTI* 665
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9720731 9731562 - CsaV3_5G013270.1 Csa05g01021 529408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01021 664 Pfam Sulfate permease family 96 476 IPR011547 GO:0016021
Csa05g01021 664 ProSitePatterns SLC26A transporters signature. 125 146 IPR018045 GO:0008271|GO:0008272
Csa05g01021 664 CDD STAS_SulP_like_sulfate_transporter 528 646 - -
Csa05g01021 664 TIGRFAM sulP: sulfate permease 83 648 IPR001902 GO:0015301|GO:0016020|GO:0055085
Csa05g01021 664 PANTHER SULFATE TRANSPORTER 33 655 IPR001902 GO:0015301|GO:0016020|GO:0055085
Csa05g01021 664 MobiDBLite consensus disorder prediction 1 22 - -
Csa05g01021 664 Pfam STAS domain 528 649 IPR002645 -
Csa05g01021 664 MobiDBLite consensus disorder prediction 1 33 - -
Csa05g01021 664 PANTHER BNAA09G30120D PROTEIN 33 655 IPR030313 -
Csa05g01021 664 SUPERFAMILY SpoIIaa-like 533 653 IPR036513 -
Csa05g01021 664 Gene3D STAS domain 507 656 IPR036513 -
Csa05g01021 664 ProSiteProfiles STAS domain profile. 527 653 IPR002645 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g01021 Csa-Chr5:9720731 Csa07g02223 Csa-Chr7:20908936 0 dispersed
Csa05g01021 Csa-Chr5:9720731 Csa07g01694 Csa-Chr7:17436452 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01021 K17471 - csv:101219163 1268.83