Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01025 ATGGGAACTGTCGAACCTTCCAATTCCCGCAAGTATGGCGTTCCTTTCTATGCTGCCGCTTGGCTTCCTTCAGCTTCTCTCCAATCCAAACACCAACCTTCACAATCTCAAGATCCTCCACATCAATCCCCTGATCCTGACATTTCCTCCGCCGACAACAAATCACTTCCATCTCATCCCGCCAGTTACTACGTAGCTGCCGCTGGCGGTGGCGGAGAAGGTCGGAGTGGGATTTCCAATGCCCTCATACTCGCTCATTTCGATTTTGAATCCCGCTCGCTCTCTGATCACCCTGTTGCAAAATATGGAACTGGTTCTGATTTGCCGTACAGAATGGCTATTCATCCAGCTGGAGATGGAATTATTTGTTCTCTACCAAAAAGTTGCAGCCTGTTTAAAGTGGATACTGAGAAGGATGCTGGAGATGAGACACTTGGACTAAAACTCTCTCAGGAGGTCCTCAGCCCCTTGGAAGATGTTGGACAGCAGTTATCATTGGCATTTAACAACGAGGGCTCTTTGCTTGCCACTGGTGGTGAGGATGGCAATTTAAGGGTCTTAAAGTGGCCTAGCTTGGACATTGTTCTCAATGAGCCCAGTTCCCATTCTTCGGTCAAGGACTTGGATTTCAGTCCTGATGGCAAATATCTTGTCTCCTTAGGTGGCCCTTGTAGAGTGTGGGATATAACTTCATCGACTTTAGTAACCTCTCTTCCGAAAGAAAATGATGAGGTTTTTATCTCATGCAAATTTTCTTTGACCAACAATGGGGATATGGTTTTATACACTGCTGCAGTGACTGGCAAAGGTGGAAGCATTGTATCTTGGAATGCAACCACTTGGAGGAGGGTAGCCTCAAAGCTCATAACTCGTGATAATATTACTGCATTCAATGTTTCATCTAGTGGAAGACTCCTTGCCTGTGGTACAACTCAGGGTGACGTTCTGATCATGAATTCAACCAGCTTGCAAGTTCGAAAGATAGTTAAAAAGGCACACCTTGGTTTTGTAACGGCATTGAGCTTTTCCCCCGATTCAAGAGCTCTGGTTTCTGCATCAATGGACTCCAGTGCTAGGGTGACTGTAATTGAGGAGGAGCAGAAAAAAGGAATGAACATGTGGATCATCATATTCATCTTGCTAATTGCTATTGCTGCTTATTTTTTCATTCAACAATCCTGA 1182 45.18 MGTVEPSNSRKYGVPFYAAAWLPSASLQSKHQPSQSQDPPHQSPDPDISSADNKSLPSHPASYYVAAAGGGGEGRSGISNALILAHFDFESRSLSDHPVAKYGTGSDLPYRMAIHPAGDGIICSLPKSCSLFKVDTEKDAGDETLGLKLSQEVLSPLEDVGQQLSLAFNNEGSLLATGGEDGNLRVLKWPSLDIVLNEPSSHSSVKDLDFSPDGKYLVSLGGPCRVWDITSSTLVTSLPKENDEVFISCKFSLTNNGDMVLYTAAVTGKGGSIVSWNATTWRRVASKLITRDNITAFNVSSSGRLLACGTTQGDVLIMNSTSLQVRKIVKKAHLGFVTALSFSPDSRALVSASMDSSARVTVIEEEQKKGMNMWIIIFILLIAIAAYFFIQQS* 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9837251 9853359 + CsaV3_5G013310.1 Csa05g01025 529412

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01025 393 Gene3D - 55 368 IPR015943 GO:0005515
Csa05g01025 393 MobiDBLite consensus disorder prediction 27 56 - -
Csa05g01025 393 SMART WD40_4 192 228 IPR001680 GO:0005515
Csa05g01025 393 SMART WD40_4 280 319 IPR001680 GO:0005515
Csa05g01025 393 SMART WD40_4 322 362 IPR001680 GO:0005515
Csa05g01025 393 SMART WD40_4 150 188 IPR001680 GO:0005515
Csa05g01025 393 PANTHER SEC12P-LIKE 2 PROTEIN-RELATED 5 388 - -
Csa05g01025 393 SUPERFAMILY WD40 repeat-like 103 360 IPR036322 GO:0005515
Csa05g01025 393 ProSiteProfiles Trp-Asp (WD) repeats profile. 330 360 IPR001680 GO:0005515
Csa05g01025 393 Pfam WD domain, G-beta repeat 331 360 IPR001680 GO:0005515
Csa05g01025 393 Pfam WD domain, G-beta repeat 198 219 IPR001680 GO:0005515
Csa05g01025 393 Pfam WD domain, G-beta repeat 165 186 IPR001680 GO:0005515
Csa05g01025 393 PANTHER PROLACTIN REGULATORY ELEMENT BINDING PROTEIN 5 388 IPR045260 GO:0005085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01025 K14003 PREB, SEC12; prolactin regulatory element-binding protein - csv:101207827 715.301
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02461 Csa-Chr2:21676077 Csa05g01025 Csa-Chr5:9837251 9.86E-46 dispersed
Csa05g01025 Csa-Chr5:9837251 Csa06g03074 Csa-Chr6:26388096 2.44E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g430 . . . . . . . . . . . Cma04g00028 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01025 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007496 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 2 1 3 2 1 1 3 1 1 1 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g01025 Csa_Chr05 FPKM 2.054422 3.062685 1.75395 1.85657 2.479861 1.856813 3.523581 0.708885 0.543318 0.595124