Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01026 ATGGATGATGAGGTGGTTCAGCGAGTTCTCCAGGAAGGCAGAGATTTTTACCAAAAACAGCCCTCCGCTTCCACCTCTTCCTCCTCCATCCTTCAATCACTGCCTCTTCATGTGTCTTTTGATCATGGATATTATCTATTAGTGAAATCCATTCAAGAACTTAGAGAGAAAAAATATGGACTTGTAACAGTCGGCATTGGTGGTCCAAGCGGCTCCGGTAAAACCAGCTTAGCAGAGAAAGTGGCATCTGTAATTGGTTGTAATGTTGTATCAATGGAAAACTATCGTGATGGAGTTGATGAGGGGAATGATTTGGATTCAATAGACTTTGATCTTCTAGTTCAGAATCTTGAGGATTTGACAAATGGAAGGGACACCATGATCCCAGTTTTTGACTTTCATCTAAAGAAACGGGTCAGTTCAAAAATAATAAAGAGTGCTTCATCTGGGGTGGTAATCATTGATGGAACCTATGCATTACATGCAAAATTACGTTCTTTGCTAGATATTCGGGTGGCAGTGGTTGGTGGGGTTCATTTTAACCTTCTTTCCAAAGTTCGACATGATATTGGAGATTCCTGCTCATTGGATTATCTTATTGATAGCATCTTTCCATTGTTTAGAAAGCACATAGAGCCGGACCTTCATCATGCCCAGATAAGAATTAATAACAGCTTTGTCTCATCATTTAGGGAGGCAATATACAAGCTGAAATGTAGAAGTGAGTTCCCAGATGTAGATTCTGCCCATGCTTTTCAAGGAAATGAAACACATATAGACAATTTTATTGAGATGTATCTTAGGCCTCCATCTGCAAGTGAAGAAGCACATATAAATGACTGGATTAAAGTGCGACAATCGGGTATTAAGTACTATCTAGCACTTGGTGACCAGAGGATAGTTGACAAAAATTTTATTATCAGACCCAAAGCTGAATTTGAGGTTGGACGGATGACTTTAGGTGGATTGCTGGACTTGGGCTATACAGTAGTGGTTGGTTATAAAAGGGCATCTATATCGGTAAATAAGGGCAATGTTTCTGTGTCACTTGAAACAATTGATTCTCTTGGTGAGACATTCATGGTGCTGCGAAGCTCAAATAGAAAAACAGTTGGAGAAGAAGTGTTGAGGATGGGTATCACAGGGTCTTGGATTACAAAGTCTTATCTGGAGATGATTCTGGAAAGAAAAGGTGTACCACGATTAAATACACCTCCACTTCTACCAAACACACCTCTGGCTAATAACCAAGAAAAGGTTGTCATTGCTCCCAGGCCCATCCGTGTTACTTCAAATCTTGTTTCTCGACTTGAGGATCTATCTCAGCCGTGGACCAGATCTCCAACAAAATCTCAAATGGAACCAGTAGTTGCAACGTGGCAATTTGTTAGCCCTCCCCAATCTGATAATTTAGTGACTGATCCCGCCTCTTTCAGGGACTCTATGAGGCTTGCTCCAATGCCTGATTCATGTGACCTGGACAGAGGTTTGCTTTTAGCTGTTCAAGCGATTCAGGTGTTATTGGAGAACAAAGGTCTTCCTATTATTGTTGGAATTGGTGGTCCAAGTGGGTCAGGGAAGACTAGTTTAGCTCATAAAATGGCTAATATTGTTGGATGTGAAGTAATTTCGCTTGAAAGTTATTACAGATCAGAGCAAGTGAAGGATTTCAAGTATGATGATTTCAGCACACTTGATTTGTCGCTGCTATCCAAGAATATTGATGACATGAGAAATGGTCGAAGAACAAAAGTACCGCTTTTTGACTTGGAGACCGGTGCTCGAAGTGGTTTTAAGGAGCTTGAAGTTTCTGAAGACTGTGGAGTGATAATTTTCGAAGGAGTATATGCTTTACATCCAGACATCAGGAAATCACTTGACTTATGGATTGCTGTTGTTGGAGGTGTTCATTCGCATCTCATTTCTCGAGTCCAAAGAGATAAATGTAAAGCAGGGTGTTTCATGTCACAAAATGACATAATGATGACGGTTTTTCCTATGTTCCAGCAGCACATCGAACCACATCTTGTTCACGCACATCTAAAAATACGGAATGACTTTGATCCTGTGCTTTCACCTGAGAGCTCATTATTTGTACTGAAGAGTAACAAGCAGGTTGCTTATCAAGATATACTCAAACTTCTTGAATCATCAAAGGCTTGCAGTTCTATACAAAATTTCATTGATATATATTTGAGGCTTCCAGGAATTCCTACAAATGGACAGTTGACAGAGAGTGATTGTATACGAGTTAGAATTTGTGAAGGCCGATTTGCGTTGTTAATACGTGAGCCTATAAGAGAAGGGAATTTCATCATTCAACCTAAGGTGGACTTTGACATTAGTATTAGTACAGTCGCTGGGCTTCTTAATCTTGGGTATCAAGCCATGGCTTATATTGAAGCATCTGCGTACATCTACCAAGATGGAAAGATTCTAATTGAGGTTGACCATTTACAAGATGCTCCTTGTCCCTATCTCCAAATAAAAGGGGTTGATAAAGAAGCTGTTGCAGCAGCTGGTTCCATGCTCGAACTGAATGATTCTTATACTACAAAGAGCTATCTTCAAATAATTTTGGAAAGTTTGCCACCGAACCGGAGTTCTGGCCTAATCCATAATCATCAAGCTGCAAGGCTGCAAGAACTTGTGGAATTTATTCAATCTCAGGGTAGTAGTACAGCTTCAGAATCCTCCCCTAGTAGAGAAGCATCATCTCCATTGGAAGGGATCATTGAGGACATGCAGTCCAGAATTAGAAGACTTGAACGATGGCTTGCAATTAATACAATTTTGTGGACCTTTTTTGTTTCCGCCTTTGTTGGTTATTCACTCTACCGGACCAAGCGTCAGTGA 2856 40.48 MDDEVVQRVLQEGRDFYQKQPSASTSSSSILQSLPLHVSFDHGYYLLVKSIQELREKKYGLVTVGIGGPSGSGKTSLAEKVASVIGCNVVSMENYRDGVDEGNDLDSIDFDLLVQNLEDLTNGRDTMIPVFDFHLKKRVSSKIIKSASSGVVIIDGTYALHAKLRSLLDIRVAVVGGVHFNLLSKVRHDIGDSCSLDYLIDSIFPLFRKHIEPDLHHAQIRINNSFVSSFREAIYKLKCRSEFPDVDSAHAFQGNETHIDNFIEMYLRPPSASEEAHINDWIKVRQSGIKYYLALGDQRIVDKNFIIRPKAEFEVGRMTLGGLLDLGYTVVVGYKRASISVNKGNVSVSLETIDSLGETFMVLRSSNRKTVGEEVLRMGITGSWITKSYLEMILERKGVPRLNTPPLLPNTPLANNQEKVVIAPRPIRVTSNLVSRLEDLSQPWTRSPTKSQMEPVVATWQFVSPPQSDNLVTDPASFRDSMRLAPMPDSCDLDRGLLLAVQAIQVLLENKGLPIIVGIGGPSGSGKTSLAHKMANIVGCEVISLESYYRSEQVKDFKYDDFSTLDLSLLSKNIDDMRNGRRTKVPLFDLETGARSGFKELEVSEDCGVIIFEGVYALHPDIRKSLDLWIAVVGGVHSHLISRVQRDKCKAGCFMSQNDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKQVAYQDILKLLESSKACSSIQNFIDIYLRLPGIPTNGQLTESDCIRVRICEGRFALLIREPIREGNFIIQPKVDFDISISTVAGLLNLGYQAMAYIEASAYIYQDGKILIEVDHLQDAPCPYLQIKGVDKEAVAAAGSMLELNDSYTTKSYLQIILESLPPNRSSGLIHNHQAARLQELVEFIQSQGSSTASESSPSREASSPLEGIIEDMQSRIRRLERWLAINTILWTFFVSAFVGYSLYRTKRQ* 952
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9862240 9895376 - CsaV3_5G013320.1 Csa05g01026 529413

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01026 951 Gene3D - 703 863 - -
Csa05g01026 951 Gene3D - 513 702 IPR027417 -
Csa05g01026 951 Gene3D - 62 240 IPR027417 -
Csa05g01026 951 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 63 227 IPR027417 -
Csa05g01026 951 SMART AAA_5 513 666 IPR003593 -
Csa05g01026 951 SMART AAA_5 60 210 IPR003593 -
Csa05g01026 951 Pfam Phosphoribulokinase / Uridine kinase family 106 222 IPR006083 GO:0005524|GO:0016301
Csa05g01026 951 Pfam Phosphoribulokinase / Uridine kinase family 516 683 IPR006083 GO:0005524|GO:0016301
Csa05g01026 951 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 511 686 IPR027417 -
Csa05g01026 951 CDD UMPK_like 516 686 - -
Csa05g01026 951 SUPERFAMILY CYTH-like phosphatases 715 858 IPR033469 -
Csa05g01026 951 CDD UMPK_like 63 225 - -
Csa05g01026 951 PRINTS Uridine kinase signature 514 531 - -
Csa05g01026 951 PRINTS Uridine kinase signature 541 552 - -
Csa05g01026 951 PRINTS Uridine kinase signature 637 647 - -
Csa05g01026 951 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 480 603 - -
Csa05g01026 951 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 2 420 - -
Csa05g01026 951 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 603 942 - -
Csa05g01026 951 PANTHER URIDINE KINASE 480 603 - -
Csa05g01026 951 PANTHER URIDINE KINASE 603 942 - -
Csa05g01026 951 PANTHER URIDINE KINASE 2 420 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01026 - - - csv:101220584 1828.53
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g01026 Csa-Chr5:9862240 Csa05g02548 Csa-Chr5:26908752 2.01E-58 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g429 . . . . . Bpe10g00920 . . . . . Cma04g00029 . . . . . . . . . . . . . . . . . . . Cone13ag0762 Cone19ag0766 . . . . . Cme10g01474 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01026 . .
Vvi1g1031 . . . . . . Bma14g01683 . . . . . . . . . . Bhi07g00113 . . Lac13g1620 Hepe01g0410 . . . . . . . . . . . . . . . Chy10g00122 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01026 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008378 1 5 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 0 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g01026 Csa_Chr05 FPKM 5.093879 6.315943 3.945249 3.710531 5.352798 5.674175 6.020887 3.3606 3.009995 3.372973