Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01034 ATGGCTGGAGATATCGAACAGCCCTTTTCCTTTAATTTTCAGGTAGAGTCTACAATTTCAGACTCCATATCATTTGGAAGGTTTGAAAAAGAATCTTTATCTTGGGAAAGGAGGTCATCATTCTCTCATAATCGTTATCTAGAAGAGGTAGAGAAATTCTCAAAACCGGGTTCAGTTAATGAGAAGAAGGCTTACTTTGAGGCTCATTTCAAGAAAAAAGGAGGATTGCTTGGTCAGAATTCAATGGAGTCCCACACTATTGAGAACGATGCATCAGAGCAAGTGAATCAAGAGGCAGACGTTGAGATTATAAACATGGAAAATCATGATGGCCATTTTGATGATAGCTCTGTCAGTTCACAAGACCATGGGGACCATTTGGTAACAGAATGTGAAGAAATGCCAAAACATGGAATTTCTGCTCCTAATCCGAAATTTGAAAATTCTTTGAGCAGTGCTAATGCTAAAGTAAATCAACAAAGTGACACTGCGGAGAGCAAGTTCTCAGCTTTGGTAATTCATAAACCAGAGGTCGAATTAAGGCCAGATCCCAAGAGTTATGGAATGAGTGCGAATATGCAGTCTGAATCCATGGAGGCAGCCCCCAAAACTGAACTAGCGAAGAAAGCAGGCAAAAACTGTTCAGGAAGTCAGCAAACTCTCACTCCCAAGATGATATCTAGAAGGGAAACAAAGGTCTCTTCCAGCTCCCAGGCTAATATTCCTCAAAGTCGAAGAAATGTTTCGAGTGGGATTCTGAAATCTAATAAAAGCAAAGGTGAGCTTTCACAAACAACTTGCACCGAAGCTCATCCATCAAAAACTGCCATTGCTCGTGCAAACCCTGTCCGTCGAACACCTAAAGTTGAGGATTCTAAAGTTCTCAAGGGAAGACCTCTTCTGGAAAATAGAAGATATAGTGGAGAGAAGGGACAAACTTGTGGAGTATCATATTCTCCTTCATCGAAGCTTGAGTCTAGATCATATTTAAAGACAACCACCAGGCAAAGTCGGACTGTCAACCCGGTCGTGCAAGATACAGGGAAAAACAGTTCACTTTCCAATAGAAGCAGGAGCTTGGCAGAAAGGAGAAATCAGGGCAAGCACGACTCTGAAATGAAGAAATTACAGAAAAATGTTGACATCAGATCAAAAGCGATACCGTCTTCTTATGGTGCTGTTCGACCAGAGTCAGATGGGAAGAAGGTTCATGGTACATTTCAGGCTGTGTTTAGTGGTGCCAAAGTAAGAAACAGTTCAAGGAAGTCCACAGCTGTGGCATCCTCCTCTCACTCACAGTTACGAAAAGACATTGTTTCCACTGTGAGTGAAGCACAAAATACTTCAAAAAACATCAGCCATCAAGCAGCCGTGCATGTTGAAGCAAGTGATGGTTCTTTGAGTTCATCAGCCAACAAAGAGCGTCGCCAAGATGCCGTATTAGAATCGGAAAACAGGAGAAGGAAAGACGGAGGAAAGGAGAAAGAACCCAGTGTGCAGAAATCCCGCATTTCGGAGAATTATAAGGCGACGTCCAAACAAGGAAGCGAGGGGAGGCAGAAAGTTGGGACGCAGAGAAGCATGAATTTGATGGGGAGATCAAGGGGTGTTGGTGGCTCTGGAACGGGACGATTTGCTGTCGGTGTTACGTCGTAA 1656 43.12 MAGDIEQPFSFNFQVESTISDSISFGRFEKESLSWERRSSFSHNRYLEEVEKFSKPGSVNEKKAYFEAHFKKKGGLLGQNSMESHTIENDASEQVNQEADVEIINMENHDGHFDDSSVSSQDHGDHLVTECEEMPKHGISAPNPKFENSLSSANAKVNQQSDTAESKFSALVIHKPEVELRPDPKSYGMSANMQSESMEAAPKTELAKKAGKNCSGSQQTLTPKMISRRETKVSSSSQANIPQSRRNVSSGILKSNKSKGELSQTTCTEAHPSKTAIARANPVRRTPKVEDSKVLKGRPLLENRRYSGEKGQTCGVSYSPSSKLESRSYLKTTTRQSRTVNPVVQDTGKNSSLSNRSRSLAERRNQGKHDSEMKKLQKNVDIRSKAIPSSYGAVRPESDGKKVHGTFQAVFSGAKVRNSSRKSTAVASSSHSQLRKDIVSTVSEAQNTSKNISHQAAVHVEASDGSLSSSANKERRQDAVLESENRRRKDGGKEKEPSVQKSRISENYKATSKQGSEGRQKVGTQRSMNLMGRSRGVGGSGTGRFAVGVTS* 552
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10013886 10018862 + CsaV3_5G013400.1 Csa05g01034 529421

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01034 551 MobiDBLite consensus disorder prediction 192 551 - -
Csa05g01034 551 MobiDBLite consensus disorder prediction 310 360 - -
Csa05g01034 551 PANTHER TPX2 (TARGETING PROTEIN FOR XKLP2) PROTEIN FAMILY-RELATED 22 551 IPR044216 -
Csa05g01034 551 PANTHER PROTEIN WVD2-LIKE 7 22 551 - -
Csa05g01034 551 MobiDBLite consensus disorder prediction 475 502 - -
Csa05g01034 551 MobiDBLite consensus disorder prediction 361 381 - -
Csa05g01034 551 MobiDBLite consensus disorder prediction 503 531 - -
Csa05g01034 551 MobiDBLite consensus disorder prediction 211 272 - -
Csa05g01034 551 MobiDBLite consensus disorder prediction 284 305 - -
Csa05g01034 551 MobiDBLite consensus disorder prediction 412 474 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01034 - - - csv:101208552 1023.85
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g01034 Csa-Chr5:10013886 Csa05g01860 Csa-Chr5:21900337 5.66E-20 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g418 . . . . . . . . Cmo04g01083 . Cma04g01004 . Car04g00941 Car04g00058 . . . . . . . . . . Cla07g00588 Cam07g0614 Cec07g0681 Cco07g0662 Clacu07g0623 Cmu07g0648 Cre07g0994 Cone13ag0767 Cone19ag0770 . . Lsi04g01132 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01034 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009363 0 3 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g01034 Csa_Chr05 FPKM 9.798309 10.725117 21.239237 21.667982 20.635761 15.489647 16.667801 9.452503 8.050676 8.378168