Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01046 ATGGCCGGAATTGTCGCCGGCGACAGCGACACTGCTCCGGCTTTGGCTCTACTCGACTTTGTTCGCGATGTTGTTCGAATGTCGGCCGGGACCAACTCTGGGCAGCTTTTCAAGAAGGATTGCACCGATCTGGTTCGTCGGATCGTGCTTTTGACGCATTTCTTTGAGGAAATCAGGGACTCTAATGCCCTTCAATTTCGCTTCCTTGATGCATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTGTGGTGCTGTTACTGGGAGAGATTCCTCTCACTTCCCGTGGCTTTCTGATTTAGTAGCTGCATTGAAGGATACTAAACGCCTAATCTTTATCGCTTCCACTTTCCGGTCTTATGGTTCTTCTTCTGAAGAGGTTGCCAAGAAGATACTGTTTCAATTCCAATGTGTGACGTGGAAGTTAGAGAAGGCATTAGGCAATCTTCCTTATGATCGCCTTGATATATCAGAGGAAGTTCAAGAACAGGTTGAATTAGTGAAAGCTCAATTGAGAAGGGCAGCAGAAAAATATGGGTCTCTAACTGCAATTCCACCATCTGTTGTTCAATCTCAGTTGTTGAAGAAAAATGTGGATATCTTAAATTTGAACAACTGGATTGATAGCTTTGATGTTGAAGAGAATGGTATTGTTGATCATGAGATTACAGTGAAATTTGATGCATTTCCAAATTGTAGAGGGTTGATGAATGGTGGTGTGGATCAAATGATTTTCAAAGGACTTGAGAAACTTCCATCCGCTTCAGAGGTTTCTTCTGATGAACATAATGATTCTGCCAAAAAGAGCGGAGACCAGGTGAAGAACCCAGATGGAGTTACAATACCTGATGATTTTTTATGCCCCATATCTTTGGAAATAATGAGGGATCCGGTTATTGTCTCCACAGGCCAGACGTATGAGAGATCTTATGTACAGAGGTGGATAGATTGTGGGAATACTACTTGTCCCAAAACTCAGCAGAAGCTCCAAAATTTGACTCTCACCCCAAATTATGTGTTGCGAAGTCTCATTAGTCAATGGTGTGTTAATCACAATATCGAGCAACCTACAGGATTAACCAACGGGAAGATAAAAAAGTGTGATGGATCGTACCGTGATGTGTGTGAGGAGATGGCAGCCATTGAAACTTTGGTCCGCAAGTTAACAAGTCATTCCATCGAGGAGCGGAGAGCATCAGTGACCGAACTTCGATCTCTATCGAAAAGAAGCACGGATAATAGAATACTGATAGCTGAGGCAGGAGCAATTCCTGCATTGGTGAATCTATTAACTTCTGAAGATGTTTTAGTACAAGAAAACGCAGTTACTTCCATTCTAAACCTTTCAATATATGAGAACAACAAAGGATTAATTATGCTTGCTGGTGCAGTACCTTCCATTGTTCAAGTTCTTAGAGTTGGAAGTATGGAAGCAAGAGAAAATGCAGCAGCAACACTTTTTAGTTTGTCTCTTGCTGATGAAAATCGGATAATCATTGGCGCTTCTGGGGCTATTCCAGCTCTTGTGGATTTACTTGAAAATGGAAGCTCAAGAGGAAAGAAGGATGCCGCAACAGCACTATTTAATTTGTGCATTTATCAGGGGAACAAGGGAAGGGCTGTGAGGGCAGGGATCGTTTCAGCTCTATTAAAGATGCTTACGGACTCAGCAAACTCCATGATCGACGAAGCTCTCACAATAATGTCGGTCCTGGCTAGCCATCAAGAAGCAAAAGTAGCTATGGTGAAAGCCAGTACCATACCTGTTCTAATAGACCTTCTGAGGACCGGATTGCCTCGCAACAAAGAAAATGCTGCTGCTATTTTGCTTGCTTTATGTAAGCGAGATACCGACAACCTTTCTTGTATAAGTCGGCTTGGTGCGGTGATTCCGCTGACAGAGCTTGCCAAAAGTGGGACGGAAAGAGCGAAAAGGAAGGCGACTTCATTGTTGGAGCATCTTCGAAAACTGCAGCAGTTATAG 1986 42.95 MAGIVAGDSDTAPALALLDFVRDVVRMSAGTNSGQLFKKDCTDLVRRIVLLTHFFEEIRDSNALQFRFLDASSSSSSSSSSSSCGAVTGRDSSHFPWLSDLVAALKDTKRLIFIASTFRSYGSSSEEVAKKILFQFQCVTWKLEKALGNLPYDRLDISEEVQEQVELVKAQLRRAAEKYGSLTAIPPSVVQSQLLKKNVDILNLNNWIDSFDVEENGIVDHEITVKFDAFPNCRGLMNGGVDQMIFKGLEKLPSASEVSSDEHNDSAKKSGDQVKNPDGVTIPDDFLCPISLEIMRDPVIVSTGQTYERSYVQRWIDCGNTTCPKTQQKLQNLTLTPNYVLRSLISQWCVNHNIEQPTGLTNGKIKKCDGSYRDVCEEMAAIETLVRKLTSHSIEERRASVTELRSLSKRSTDNRILIAEAGAIPALVNLLTSEDVLVQENAVTSILNLSIYENNKGLIMLAGAVPSIVQVLRVGSMEARENAAATLFSLSLADENRIIIGASGAIPALVDLLENGSSRGKKDAATALFNLCIYQGNKGRAVRAGIVSALLKMLTDSANSMIDEALTIMSVLASHQEAKVAMVKASTIPVLIDLLRTGLPRNKENAAAILLALCKRDTDNLSCISRLGAVIPLTELAKSGTERAKRKATSLLEHLRKLQQL* 662
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10336742 10340681 - CsaV3_5G013610.1 Csa05g01046 529433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01046 661 Gene3D - 564 660 IPR011989 -
Csa05g01046 661 Gene3D - 457 563 IPR011989 -
Csa05g01046 661 Gene3D - 360 456 IPR011989 -
Csa05g01046 661 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 504 546 IPR000225 GO:0005515
Csa05g01046 661 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 355 IPR013083 -
Csa05g01046 661 Coils Coil 158 178 - -
Csa05g01046 661 CDD RING-Ubox_PUB 286 328 IPR045210 -
Csa05g01046 661 SUPERFAMILY ARM repeat 372 655 IPR016024 -
Csa05g01046 661 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 422 464 IPR000225 GO:0005515
Csa05g01046 661 Coils Coil 641 661 - -
Csa05g01046 661 ProSiteProfiles U-box domain profile. 281 355 IPR003613 GO:0004842|GO:0016567
Csa05g01046 661 SMART arm_5 411 451 IPR000225 GO:0005515
Csa05g01046 661 SMART arm_5 617 657 IPR000225 GO:0005515
Csa05g01046 661 SMART arm_5 575 615 IPR000225 GO:0005515
Csa05g01046 661 SMART arm_5 534 574 IPR000225 GO:0005515
Csa05g01046 661 SMART arm_5 452 492 IPR000225 GO:0005515
Csa05g01046 661 SMART arm_5 493 533 IPR000225 GO:0005515
Csa05g01046 661 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 11 20 658 - -
Csa05g01046 661 MobiDBLite consensus disorder prediction 256 278 - -
Csa05g01046 661 Pfam Armadillo/beta-catenin-like repeat 494 532 IPR000225 GO:0005515
Csa05g01046 661 Pfam Armadillo/beta-catenin-like repeat 412 450 IPR000225 GO:0005515
Csa05g01046 661 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 463 505 IPR000225 GO:0005515
Csa05g01046 661 MobiDBLite consensus disorder prediction 256 272 - -
Csa05g01046 661 Pfam U-box domain 282 353 IPR003613 GO:0004842|GO:0016567
Csa05g01046 661 PANTHER U BOX DOMAIN-CONTAINING 20 658 - -
Csa05g01046 661 SUPERFAMILY RING/U-box 278 355 - -
Csa05g01046 661 SMART Ubox_2 285 348 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g01046 Csa-Chr5:10336742 Csa05g02038 Csa-Chr5:23691822 0 dispersed
Csa06g01954 Csa-Chr6:17644201 Csa05g01046 Csa-Chr5:10336742 8.86E-19 dispersed
Csa06g02200 Csa-Chr6:19847220 Csa05g01046 Csa-Chr5:10336742 2.07E-31 dispersed
Csa06g03568 Csa-Chr6:28914795 Csa05g01046 Csa-Chr5:10336742 1.88E-57 dispersed
Csa06g03699 Csa-Chr6:29608260 Csa05g01046 Csa-Chr5:10336742 3.37E-16 dispersed
Csa05g01046 Csa-Chr5:10336742 Csa01g02400 Csa-Chr1:21307088 4.40E-166 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01046 - - csv:101221534 1263.06