Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01047 ATGTCTTCCTTAACCATTCCTCCTCTTCTTACTTCTCCTCGGGACGATGCTGCCCTACTTTACCGCGCCTTCAAAGGTTTTGGATGTGATACTGCTGCAGTTATCAATGTTCTTGCACATAGAGATGCAGCACAACGTGCTCTCATTCAGCAGGAATATAGAGCCATTTACTCTGAGGAACTCACCAAACGCTTAAAATCTGAGCTTAGTGGCAAACTTGAGGATGCAATTTTACTATGGATGTATGATCCAGCAACCAGAGATGCTATTCTAGTGAAGAATGCTATATATGGAGAAACCTCTACTCTTAGAGCTGCCACTGAAGTAATTTGTTCTCGTACACCGTCGCAGATTCAGCATTTTAAACAAATTTACTTGGCCATGTTTCGTTCTCCCCTTGAACGTGATATTGAACGCACTGCTACCGGTGATCATCTAAAGCTGCTATTAGCTTATGTTAGTAAACCGCGATATGAAGGCCCAGAAGTCGACAGAGCTCTGGTAGATAAAGATGCCAAATCTCTCTATAAAGCTGGAGAGAAAAGATTGGGAACTGATGAAGATAAGTTCATAAAAATTTTCAGTGAAAGAAGCAGGGCACATCTCTCCGCTGTTAGTCATGCTTATAAACATTCATATGGCAACTCTTTGAAAGAGGTTATAAAGAAAGAAACATCTGGGAATTTTGAGCATGGCCTTCTCACAATTTTGCTGTGTGCTGAGAATCCTGGGTTTTACTTTGCAAAGGTATTGCGCAAGGCAATGAAAGGAATGGGAACAGACGACTCGACCCTGATAAGAGTAATTGTGTCAAGAGCTGAGATAGATATGCAGTATATAAAGGCAGAATATCACAAGAAATATAAGAAAACACTGAACAAAGCAGTTCAGTCCGAGACTTCAGGCAGCTACAAGGACTTTCTTCTATCCTTGTTGGGTCCTGATCGTTAG 951 41.43 MSSLTIPPLLTSPRDDAALLYRAFKGFGCDTAAVINVLAHRDAAQRALIQQEYRAIYSEELTKRLKSELSGKLEDAILLWMYDPATRDAILVKNAIYGETSTLRAATEVICSRTPSQIQHFKQIYLAMFRSPLERDIERTATGDHLKLLLAYVSKPRYEGPEVDRALVDKDAKSLYKAGEKRLGTDEDKFIKIFSERSRAHLSAVSHAYKHSYGNSLKEVIKKETSGNFEHGLLTILLCAENPGFYFAKVLRKAMKGMGTDDSTLIRVIVSRAEIDMQYIKAEYHKKYKKTLNKAVQSETSGSYKDFLLSLLGPDR* 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10368325 10373204 + CsaV3_5G013620.1 Csa05g01047 529434

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01047 316 ProSiteProfiles Annexin repeat profile. 11 82 IPR018502 GO:0005509|GO:0005544
Csa05g01047 316 Gene3D Annexin 1 82 IPR037104 GO:0005509|GO:0005544
Csa05g01047 316 ProSitePatterns Annexin repeat signature. 259 311 IPR018252 GO:0005509|GO:0005544
Csa05g01047 316 ProSiteProfiles Annexin repeat profile. 166 238 IPR018502 GO:0005509|GO:0005544
Csa05g01047 316 ProSiteProfiles Annexin repeat profile. 83 154 IPR018502 GO:0005509|GO:0005544
Csa05g01047 316 SUPERFAMILY Annexin 2 315 IPR037104 GO:0005509|GO:0005544
Csa05g01047 316 ProSiteProfiles Annexin repeat profile. 242 313 IPR018502 GO:0005509|GO:0005544
Csa05g01047 316 Pfam Annexin 171 236 IPR018502 GO:0005509|GO:0005544
Csa05g01047 316 Pfam Annexin 88 151 IPR018502 GO:0005509|GO:0005544
Csa05g01047 316 Pfam Annexin 246 311 IPR018502 GO:0005509|GO:0005544
Csa05g01047 316 Pfam Annexin 16 79 IPR018502 GO:0005509|GO:0005544
Csa05g01047 316 PANTHER ANNEXIN 7 315 - -
Csa05g01047 316 Gene3D Annexin 243 313 IPR037104 GO:0005509|GO:0005544
Csa05g01047 316 Gene3D Annexin 157 241 IPR037104 GO:0005509|GO:0005544
Csa05g01047 316 PANTHER ANNEXIN 7 315 - -
Csa05g01047 316 Gene3D Annexin 83 154 IPR037104 GO:0005509|GO:0005544
Csa05g01047 316 PRINTS Annexin family signature 25 47 IPR001464 GO:0005509|GO:0005544
Csa05g01047 316 PRINTS Annexin family signature 65 81 IPR001464 GO:0005509|GO:0005544
Csa05g01047 316 PRINTS Annexin family signature 92 113 IPR001464 GO:0005509|GO:0005544
Csa05g01047 316 PRINTS Annexin family signature 175 201 IPR001464 GO:0005509|GO:0005544
Csa05g01047 316 PRINTS Annexin family signature 255 275 IPR001464 GO:0005509|GO:0005544
Csa05g01047 316 PRINTS Annexin family signature 299 312 IPR001464 GO:0005509|GO:0005544
Csa05g01047 316 SMART annex3 259 311 IPR018502 GO:0005509|GO:0005544
Csa05g01047 316 SMART annex3 28 80 IPR018502 GO:0005509|GO:0005544
Csa05g01047 316 SMART annex3 100 152 IPR018502 GO:0005509|GO:0005544
Csa05g01047 316 SMART annex3 184 236 IPR018502 GO:0005509|GO:0005544
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01047 K17098 ANNAT; annexin D - csv:101209769 620.928
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa05g02646 Csa05g01047 CCT
Csa05g01047 Csa05g02646 ECH
Csa05g02646 Csa05g01047 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g01047 Csa-Chr5:10368325 Csa07g00545 Csa-Chr7:3980777 6.14E-74 dispersed
Csa05g01047 Csa-Chr5:10368325 Csa05g01048 Csa-Chr5:10379847 1.94E-09 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g363 Blo01g00737 . . . . . . . Cmo04g01556 Cmo18g01002 . . Car04g01541 Car18g00915 . Cpe09g00324 Cpe01g01324 Bhi07g01283 . . Lac13g0534 Hepe01g1161 . . Cla07g00607 Cam07g0632 Cec07g0696 Cco07g0682 . Cmu07g0661 Cre07g1009 Cone13ag0799 Cone19ag0805 . . Lsi04g01144 Csa05g02646 Chy10g01178 Cme10g00224 . . . . . . Bma01g00444 . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01047 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003010 1 2 1 1 0 2 2 2 2 0 2 2 2 2 2 2 2 2 2 2 2 1 2 2 3 2 2 3 2 1 53
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g01047 Csa_Chr05 FPKM 11.614886 11.802873 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0