Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa05g01064 | ATGATTGAAAAGGAATTTTTCACTGAATATGGTGAAGCTACTCAATACGAGATTGAAGAAGTTGTTGGTAAAGGGAGCTATGGAGTTGTGGCATCTGCCATTGACACTCATTCTGCTCATGTGTTCCATAGAGATTTGAAGCCGAAGAATATACTTGCAAATGCAGACTGCAAGCTGAAGATCTGTGACTTTGGACTTGCACGTGCATCTTTCAGTGATGCCCCGTCTGCTATATTTTGGACTGATTATGTCGCTACTCGATGGTACCGTGCTCCTGAACTTTGTGGTTCTTTTTTCTCAAAGTATACACCAGCTATTGATATTTGGAGCATAGGATGTATATTTGCTGAAATGTTGGGAAGCAAGCCTTTGTTCCCAGGGAAAAGTGTTGTCCATGAGCTGGATCTAATAACTGACTTACTTGGTACCCCTTCAGCTGAATGTATTGCTAAGATTCGTAATGAAAAGGCTAAAAGGTATTTGAGTGGCATGAGAAAAAAAGATCCAATACCTCTATCGAAAAAGTTTCCTAATGCAGACCCACTAGCTCTTCGTTTACTTGAACGTCTGCTTGCATTTGATCCTGATGATCGCCCTTCTGCTGAGGAGGCATTAGCTGATCCTTATTTCCATGGACTGGCTAATCTGAAGGATGAACCATCCAGGCAACCCATTTCAAAACTCGAGTTTGAGTTTGAAAAGAGAAAGTTGACCAAAGATGATGTCAGGGAACTTATATATAGAGAAATTTTGGAGTATCACCCTCAAATGCTTAAGGAATACCTTCAAGGCTCCGGGAGCCACTTTTTGTATCCCAGTGGAATTGACCGATTCAAGCGACAATTTGATCATCTTGAGGAACGTTCTGGTAAAGGTGAGAGAGGCAGTCCACTTCTAAGGAAGCATGCCTCCTTGCCTAGGGAGCGAATATATACGCTGGGATATGAAGATGATGATGATGAAAAACATAGAACAGGATACCGAAATGCAGCTTCAATTGAACGTGCAGCGGTTCATAGCCCACCTGCTTATCCATTAACTGCTCGGAACGATTGCAATAGTTATAACCTGTTGAGGAGTGCTAGTATAAGTTGTTCTAAATGGGTGGATTAA | 1113 | 41.78 | MIEKEFFTEYGEATQYEIEEVVGKGSYGVVASAIDTHSAHVFHRDLKPKNILANADCKLKICDFGLARASFSDAPSAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEMLGSKPLFPGKSVVHELDLITDLLGTPSAECIAKIRNEKAKRYLSGMRKKDPIPLSKKFPNADPLALRLLERLLAFDPDDRPSAEEALADPYFHGLANLKDEPSRQPISKLEFEFEKRKLTKDDVRELIYREILEYHPQMLKEYLQGSGSHFLYPSGIDRFKRQFDHLEERSGKGERGSPLLRKHASLPRERIYTLGYEDDDDEKHRTGYRNAASIERAAVHSPPAYPLTARNDCNSYNLLRSASISCSKWVD* | 371 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 10667094 | 10673473 | - | CsaV3_5G013880.1 | Csa05g01064 | 529451 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa05g01064 | 370 | Pfam | Protein kinase domain | 37 | 210 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa05g01064 | 370 | SMART | serkin_6 | 16 | 210 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa05g01064 | 370 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE | 4 | 38 | - | - | |
Csa05g01064 | 370 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE | 37 | 313 | - | - | |
Csa05g01064 | 370 | ProSiteProfiles | Protein kinase domain profile. | 1 | 210 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa05g01064 | 370 | Gene3D | Phosphorylase Kinase; domain 1 | 234 | 256 | - | - | |
Csa05g01064 | 370 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE | 4 | 38 | - | - | |
Csa05g01064 | 370 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE | 37 | 313 | - | - | |
Csa05g01064 | 370 | SUPERFAMILY | Protein kinase-like (PK-like) | 15 | 256 | IPR011009 | - | |
Csa05g01064 | 370 | Gene3D | Transferase(Phosphotransferase) domain 1 | 29 | 233 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa05g01064 | Csa-Chr5:10667094 | Csa06g00543 | Csa-Chr6:4664720 | 3.10E-10 | dispersed | |
Csa05g01064 | Csa-Chr5:10667094 | Csa01g00426 | Csa-Chr1:2662730 | 1.22E-11 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
78235 | PF00069 | Pkinase | 2.50E-35 | CL0016 | Csa | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa05g01064 | - | - | csv:101204645 | 675.626 |