Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01064 ATGATTGAAAAGGAATTTTTCACTGAATATGGTGAAGCTACTCAATACGAGATTGAAGAAGTTGTTGGTAAAGGGAGCTATGGAGTTGTGGCATCTGCCATTGACACTCATTCTGCTCATGTGTTCCATAGAGATTTGAAGCCGAAGAATATACTTGCAAATGCAGACTGCAAGCTGAAGATCTGTGACTTTGGACTTGCACGTGCATCTTTCAGTGATGCCCCGTCTGCTATATTTTGGACTGATTATGTCGCTACTCGATGGTACCGTGCTCCTGAACTTTGTGGTTCTTTTTTCTCAAAGTATACACCAGCTATTGATATTTGGAGCATAGGATGTATATTTGCTGAAATGTTGGGAAGCAAGCCTTTGTTCCCAGGGAAAAGTGTTGTCCATGAGCTGGATCTAATAACTGACTTACTTGGTACCCCTTCAGCTGAATGTATTGCTAAGATTCGTAATGAAAAGGCTAAAAGGTATTTGAGTGGCATGAGAAAAAAAGATCCAATACCTCTATCGAAAAAGTTTCCTAATGCAGACCCACTAGCTCTTCGTTTACTTGAACGTCTGCTTGCATTTGATCCTGATGATCGCCCTTCTGCTGAGGAGGCATTAGCTGATCCTTATTTCCATGGACTGGCTAATCTGAAGGATGAACCATCCAGGCAACCCATTTCAAAACTCGAGTTTGAGTTTGAAAAGAGAAAGTTGACCAAAGATGATGTCAGGGAACTTATATATAGAGAAATTTTGGAGTATCACCCTCAAATGCTTAAGGAATACCTTCAAGGCTCCGGGAGCCACTTTTTGTATCCCAGTGGAATTGACCGATTCAAGCGACAATTTGATCATCTTGAGGAACGTTCTGGTAAAGGTGAGAGAGGCAGTCCACTTCTAAGGAAGCATGCCTCCTTGCCTAGGGAGCGAATATATACGCTGGGATATGAAGATGATGATGATGAAAAACATAGAACAGGATACCGAAATGCAGCTTCAATTGAACGTGCAGCGGTTCATAGCCCACCTGCTTATCCATTAACTGCTCGGAACGATTGCAATAGTTATAACCTGTTGAGGAGTGCTAGTATAAGTTGTTCTAAATGGGTGGATTAA 1113 41.78 MIEKEFFTEYGEATQYEIEEVVGKGSYGVVASAIDTHSAHVFHRDLKPKNILANADCKLKICDFGLARASFSDAPSAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEMLGSKPLFPGKSVVHELDLITDLLGTPSAECIAKIRNEKAKRYLSGMRKKDPIPLSKKFPNADPLALRLLERLLAFDPDDRPSAEEALADPYFHGLANLKDEPSRQPISKLEFEFEKRKLTKDDVRELIYREILEYHPQMLKEYLQGSGSHFLYPSGIDRFKRQFDHLEERSGKGERGSPLLRKHASLPRERIYTLGYEDDDDEKHRTGYRNAASIERAAVHSPPAYPLTARNDCNSYNLLRSASISCSKWVD* 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10667094 10673473 - CsaV3_5G013880.1 Csa05g01064 529451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01064 370 Pfam Protein kinase domain 37 210 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g01064 370 SMART serkin_6 16 210 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g01064 370 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 4 38 - -
Csa05g01064 370 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 37 313 - -
Csa05g01064 370 ProSiteProfiles Protein kinase domain profile. 1 210 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g01064 370 Gene3D Phosphorylase Kinase; domain 1 234 256 - -
Csa05g01064 370 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 4 38 - -
Csa05g01064 370 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 37 313 - -
Csa05g01064 370 SUPERFAMILY Protein kinase-like (PK-like) 15 256 IPR011009 -
Csa05g01064 370 Gene3D Transferase(Phosphotransferase) domain 1 29 233 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g01064 Csa-Chr5:10667094 Csa06g00543 Csa-Chr6:4664720 3.10E-10 dispersed
Csa05g01064 Csa-Chr5:10667094 Csa01g00426 Csa-Chr1:2662730 1.22E-11 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78235 PF00069 Pkinase 2.50E-35 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01064 - - csv:101204645 675.626