Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01080 ATGACGGGAGGACAAGGGGATACCGGAAATGGGATTGAGGCGGTGGCTGGATCAAATAATCCAAGACCGGAGACCGCAGCTCCACCATCGGAAGGGGGTGGTCCGGCGGGTTCTGCAGCGGAGGCAGGTAAGAAGAAGAGGGGGAGACCGAGGAAGTATGGGCCGGACGGGAAGTTGAATGTGGCGGCACTGTCGCCGAAGCCCATATCGGCGTCGGCACCGGCACCGGCAGCTGTTATTGATTTCTCGGCGGAAAAACGTGGAAAAGTGCGGCCGGCGAGTTCCTTGACCAAAACCAAATATGAAGTGGAGAATTTAGGTGAATGGGTACCTTGTTCTGTTGGTGCCAATTTTACACCCCATATCATCACCGTAAGCAGTGGGGAGGACGTAACAATGAAGGTTCTCTCATTCTCTCAACAAGGACCTCGAGCAATCTGCATTCTGTCTGCTAACGGCGTGATTTCGAGCGTAACGCTTCGTCAACCCGACTCCTCCGGTGGAACCTTAACATATGAGGGTCGTTTTGAAATATTGTCGTTGTCGGGATCATTCATGCCGAGTGACAGTATAGGAACAAAGAGCAGAATTGGTGGAATGAGTGTCTCCTTAGCAAGCCCAGACGGACGAGTTGTTGGTGGTGGAGTTGCTGGTTTGTTAGTAGCTGCAAGTCCAGTTCAAGTGGTTGTAGGAAGCTTTATATCTGGTAACCAACATGAGCAAAAGCCGAAGAAGCCAAAACACGATGTTGTATTACCGGTTTCTACATTTCCAATCTCTAGTGTTGAACCAAAATCATACAAGACGACGACAACTATGACAACATCTTCGTTTCGTGCGGAAACATGGTCACCTAATGTAGTTCCAGATTTAAGAAGTCAACCAACTGATATCAATGTATCATTAACTAGTGGTTGA 918 49.02 MTGGQGDTGNGIEAVAGSNNPRPETAAPPSEGGGPAGSAAEAGKKKRGRPRKYGPDGKLNVAALSPKPISASAPAPAAVIDFSAEKRGKVRPASSLTKTKYEVENLGEWVPCSVGANFTPHIITVSSGEDVTMKVLSFSQQGPRAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPSDSIGTKSRIGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFISGNQHEQKPKKPKHDVVLPVSTFPISSVEPKSYKTTTTMTTSSFRAETWSPNVVPDLRSQPTDINVSLTSG* 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10953266 10956328 - CsaV3_5G014040.1 Csa05g01080 529467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01080 305 Pfam Plants and Prokaryotes Conserved (PCC) domain 120 233 IPR005175 -
Csa05g01080 305 Gene3D - 120 249 - -
Csa05g01080 305 MobiDBLite consensus disorder prediction 1 15 - -
Csa05g01080 305 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 1 27 302 - -
Csa05g01080 305 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 27 302 IPR039605 GO:0003680
Csa05g01080 305 SUPERFAMILY AF0104/ALDC/Ptd012-like 117 239 - -
Csa05g01080 305 ProSiteProfiles PPC domain profile profile. 115 260 IPR005175 -
Csa05g01080 305 CDD DUF296 119 210 IPR005175 -
Csa05g01080 305 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01634 Csa-Chr3:12213375 Csa05g01080 Csa-Chr5:10953266 6.56E-73 dispersed
Csa05g00365 Csa-Chr5:2347041 Csa05g01080 Csa-Chr5:10953266 1.49E-121 dispersed
Csa05g00539 Csa-Chr5:3452950 Csa05g01080 Csa-Chr5:10953266 1.03E-71 dispersed
Csa05g01080 Csa-Chr5:10953266 Csa06g02206 Csa-Chr6:19888856 1.56E-62 dispersed
Csa05g01080 Csa-Chr5:10953266 Csa05g01081 Csa-Chr5:10963654 2.59E-70 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01080 - - csv:101205374 512.301