Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01091 ATGGCATCAGGGGTGTTGGTTTTGGTCTTCGCTTGCTTCCTCATATCATTCCCTCAAAATTCTTCTCAATCTACTACAGATCCTCATCAAGAGCAAACTCTGAACTCCATGTTTAGACAATGGAATATATTCGCGCCTAACAATACAAAGAAAAACGGGGTAAGATTTCGGAGTTGGAATATTAGCGGCAACCTCTGCACTGGGATTGCTAAGGATAACAGCAACATCGAAGATTCAACAGAAAGTCCTTTGATCAAATGTGATTGCTCCTACAACAATAAATCTACTTGCCACATAACCCATCTGAAGGTTTCAGGATTGGATATTGCTGGTGTAATCCCTCCCGAGCTATGGACACTGACTTCCCTCACCTATTTGAATTTGGAGAAAAATTTATTGTCAGGGACACTGTCGCCTTCTGTTGGTAATCTAACGCAATTGCATACCTTGCGCATTCAAATCAATAAATTATCAGGAAAACTTCCAAAGGAACTCGGACATCTTGCCAACCTAAGATTCTTGGCCTTTGGGGTCAACAATTTCTCTGGTACCTTGCCATCAGAGCTTGGACATCTTTTTGGGCTAGAGGAACTGTACTTAGATAGTTCTGGAGTTCAGGGTGACATTCCCACAACATTTTCAAATCTTACAAATTTGCAGACAGTATTGGCATCAGACAACAAACTCACCGGAGAAATACCTGGATTCATTGGGAGTTGGCTAAAACTCAGAACATTGATGTTTCAAGGAAACTCTTTCACGGGACCAATACCGTCAACATTTTCAAATTTGACAGCTATGAATGATTTGAGAATAGGTGATCTATCAAATGGGGGGTCTTCCCTAGAATTCATCAAGAATATGACGTCTCTGCGGACCCTAGTTTTGAGGAATAATGGTATATCAGATTTAATTCCTTCCTACATTGGAGAGTTTGAAGAATTGACGTGGCTAGACTTGAGTTTTAACAAGTTAAAGGGAGAAATTCCAGAGTGGCTTTTCAACTTGACTAAGCTGTCATACTTGTTTCTTGGAAACAACAAGTTAACGGGTAGACTACCTCAAACTAAGTCTGACACTCTTCTTGTTATAGACTTATCATACAATGGTTTATCAGGGACCATTCCTGAATGGGTCGATGGTTCAACCTTACAGTTAAATTTAGTTGCCAACAACTTCCTCTCAGAACATGTGAAAGAGAGTAATTTACCTTTGGGTTTGCACTGTCTTCAACGAGAATTTTCTTGTAATGGAACTTCTGGAGGTTCTAGTTTGAAACCTAGTTTTGGGATCAACTGTGGAGGTTCAAAATTTGATGAGTATGATAAACAAAGTGCGATTACTGGTGGAGCTTCATATTATGTTAGTGACTCAGAAACTTGGGCTGTTAGTGATGTTGGAAACTTCCCTAATACCGAAAACTCTACTAGTTATAACAGAGGCAATAGAAACTCTACTAGTTATAACAGAGACAGTGACACAACAGAATATACATTTGCAAATAGAAACGTCTCAGAACTTTTTTGGACACAAGAATTATCTACTTCATCATTGAGATTTTACGGACTGGGACTTAAAAACGGGATCTACACTGTGAACCTTCTGTTTGTAGAACAAGCTTTCACAAATTTGTCGAAATGGAGCAGCCTTGGGAGGCGGGTCTTTGATATATATATTCAGGGGGAACTTTTCCAGGAGGATTTTAGTATTCAAAATGAGGCAGGTGGGTCTTTTCGTCCTATTTCAAAGCCATTTAAGGTACCAGTTTCAAAAAACTACATGGAAATTCACCTTTTCTGGGCTGGGAAAGGTACTTGCTGCATACCTAAAGACGGTACTTTTGGTCCTTCTGTTTCAGCAATCTTTGCAAGTCTAGATTCTGATCAGCCTGTAAGTAATGCGAAGAAGGGAACTAGTCAAATAAAGGGGACCGGTAGTAAGAAGAATGCAGCCATTCTAATAGTGGGGATTGTTGTTGGTGTAGGATCTGTTTGCTTTCTAGTTTTCACAATTTCCATTCTTTTCTATAGAAGGAAAGGTCGTTCCTCTGAAGATGAAGAACTCTTCGGAATTGATGATCAGAGACCTCACACTTATAGTTATTCTGAACTAAGGACTGCTACAGAGGATTTTAGTTCATCCAACAAGCTTGGAGAAGGGGGCTTTGGACCCGTTTACAAGGGAATACTGAATGATGGAAGAGTAATTGCTGTGAAGCAACTTTCTGTAAAATCTAATCAAGGAAGGAACCAATTTGTGGCTGAGATTTCTACATTATCCGCCGTGCAGCATCGCAACCTCGTGAAGTTGCACGGGTGTTGCATTGAGGGCCAAAATCGTCTCCTTGTGTATGAGTACCTGGAGAAAGGGAGTCTGGACCGAGCATTATTTGGAAATAGAAGCTTCACTCTTGATTGGCCAAAACGATTTGATATATGCTTGGGTGTGGCGAGGGGTCTCTCTTATCTTCATGAAGAATCAAGGCTTCGAATTGTTCATAGAGATGTTAAAGCCAGTAACATTCTACTTGATGCTGATCTGAACCCCAAAATTTCAGATTTTGGTTTAGCCAAACTTTATGATGACAAAAAGACTCATATTAGCACCGTTGTTGCTGGAACAATTGGATATCTTGCACCTGAGTACGCCATGCGTGGCCATCTAACGGAGAAAGCTGATATCTTTAGTTTCGGTGTCGTGGCTCTTGAAATTGTCAGCGGTAGGCCGAATTCCGACAGAAGCTTGGAGGAGGACAAAGTTTTTCTTCTTGAACTGGCTTGGTACCTCTATGAAAACAATCGTGAAATCGAGTTGCTAGATTCGGATTTGTCGACATTCAATGAGGATGAAGTAACACGAGTTATTCGAGTAGGTCTAATGTGCACTCAAACAACCCCAGCTCGACGGCCATTGATGTCACGGGTTGTGGCAATGTTGTGTGGAGACATTGAAGTGGCTGCTATAACTTCAAAGCCAGGATACTTAAGTGAATGGACCTTCGATGACTTGGTCACTTCTACAAATGATGCAACTACAGAAGGATCCAGCACTACCCATCAAGGTTCTTCAAGTTTTAGCATCCATGCTAACGATGCAACCTCTTCAAATTAA 3111 40.79 MASGVLVLVFACFLISFPQNSSQSTTDPHQEQTLNSMFRQWNIFAPNNTKKNGVRFRSWNISGNLCTGIAKDNSNIEDSTESPLIKCDCSYNNKSTCHITHLKVSGLDIAGVIPPELWTLTSLTYLNLEKNLLSGTLSPSVGNLTQLHTLRIQINKLSGKLPKELGHLANLRFLAFGVNNFSGTLPSELGHLFGLEELYLDSSGVQGDIPTTFSNLTNLQTVLASDNKLTGEIPGFIGSWLKLRTLMFQGNSFTGPIPSTFSNLTAMNDLRIGDLSNGGSSLEFIKNMTSLRTLVLRNNGISDLIPSYIGEFEELTWLDLSFNKLKGEIPEWLFNLTKLSYLFLGNNKLTGRLPQTKSDTLLVIDLSYNGLSGTIPEWVDGSTLQLNLVANNFLSEHVKESNLPLGLHCLQREFSCNGTSGGSSLKPSFGINCGGSKFDEYDKQSAITGGASYYVSDSETWAVSDVGNFPNTENSTSYNRGNRNSTSYNRDSDTTEYTFANRNVSELFWTQELSTSSLRFYGLGLKNGIYTVNLLFVEQAFTNLSKWSSLGRRVFDIYIQGELFQEDFSIQNEAGGSFRPISKPFKVPVSKNYMEIHLFWAGKGTCCIPKDGTFGPSVSAIFASLDSDQPVSNAKKGTSQIKGTGSKKNAAILIVGIVVGVGSVCFLVFTISILFYRRKGRSSEDEELFGIDDQRPHTYSYSELRTATEDFSSSNKLGEGGFGPVYKGILNDGRVIAVKQLSVKSNQGRNQFVAEISTLSAVQHRNLVKLHGCCIEGQNRLLVYEYLEKGSLDRALFGNRSFTLDWPKRFDICLGVARGLSYLHEESRLRIVHRDVKASNILLDADLNPKISDFGLAKLYDDKKTHISTVVAGTIGYLAPEYAMRGHLTEKADIFSFGVVALEIVSGRPNSDRSLEEDKVFLLELAWYLYENNREIELLDSDLSTFNEDEVTRVIRVGLMCTQTTPARRPLMSRVVAMLCGDIEVAAITSKPGYLSEWTFDDLVTSTNDATTEGSSTTHQGSSSFSIHANDATSSN* 1037
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11066223 11130380 - CsaV3_5G014150.1 Csa05g01091 529478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01091 1036 Pfam Leucine rich repeat 290 349 IPR001611 GO:0005515
Csa05g01091 1036 Pfam Protein kinase domain 712 916 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g01091 1036 CDD STKc_IRAK 717 981 - -
Csa05g01091 1036 Gene3D - 428 624 - -
Csa05g01091 1036 SUPERFAMILY L domain-like 94 377 - -
Csa05g01091 1036 Gene3D Ribonuclease Inhibitor 278 421 IPR032675 -
Csa05g01091 1036 ProSiteProfiles Protein kinase domain profile. 711 985 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g01091 1036 Gene3D Transferase(Phosphotransferase) domain 1 787 989 - -
Csa05g01091 1036 ProSitePatterns Serine/Threonine protein kinases active-site signature. 831 843 IPR008271 GO:0004672|GO:0006468
Csa05g01091 1036 Pfam Malectin domain 431 621 IPR021720 -
Csa05g01091 1036 SUPERFAMILY Protein kinase-like (PK-like) 694 979 IPR011009 -
Csa05g01091 1036 SMART serkin_6 711 979 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g01091 1036 Gene3D Ribonuclease Inhibitor 46 277 IPR032675 -
Csa05g01091 1036 MobiDBLite consensus disorder prediction 472 492 - -
Csa05g01091 1036 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 134 1025 - -
Csa05g01091 1036 MobiDBLite consensus disorder prediction 1009 1036 - -
Csa05g01091 1036 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 134 1025 - -
Csa05g01091 1036 Gene3D Phosphorylase Kinase; domain 1 675 786 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00800 Csa-Chr4:5599656 Csa05g01091 Csa-Chr5:11066223 1.72E-112 dispersed
Csa05g01091 Csa-Chr5:11066223 Csa07g01190 Csa-Chr7:11679101 0 dispersed
Csa05g01091 Csa-Chr5:11066223 Csa04g02258 Csa-Chr4:23201564 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78236 PF00069 Pkinase 1.00E-46 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01091 - - csv:101214104 2055.8