Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01100 ATGAAGCTCATCCCCTTCCTCCCATGGCCGAATCTCCATATGGTCCTCCTCCTCCTCTTCTTCCTTTCTTCTCCTCCACTGCTATATTCATCCCCTGTTTATTCACTTCCCCACAATGAAGGACGAGCGCTTATGTCAATCAAAGCCTCGTTTAGCAATGTAGCTAATGTGTTGCTTGACTGGGATGATGATCATAACCATGATTTCTGTTCATGGCGTGGGGTTTTCTGTGACAATGTTAGCCTTTCAGTTGCTGCTCTGAACTTATCCAACTTGAATCTGGGTGGGGAGATTTCACCATCCATTGGAGATTTGAGGAACTTACAGTCAATTGATTTTCAAGGGAATAAACTGACGGGCCAAATCCCTGATGAGATTGGTAACTGTGGTCTTCTTGTCCATTTGGATTTGTCTGATAATTTGCTCTATGGAGACATCCCCTTCACGGTTTCAAAGCTGAAGCAGCTCGAGTTTCTGAATATGAAGAACAATCAATTGACCGGTCCGATCCCTTCGACCTTAACACAGATTCCCAATCTGAAAACTCTCGATCTTGCTAGAAACCAGCTTACTGGGGAGATACCTAGATTAATCTATTGGAATGAAGTACTGCAATATCTTGGATTACGAGGGAACTTTTTGACAGGATCGTTGTCCTCGGATATGTGTCAATTGACTGGCTTGTGGTATTTCGATGTAAGGGGCAACAATTTGACTGGCTCGATACCTGATAGCATAGGCAACTGTACCAGTTTTGAAATTCTGGATATATCTTACAATCAGATCTCAGGAGAGATTCCATACAACATTGGATTTCTACAAGTGGCCACTTTATCGTTACAGGGAAATAGGTTAACTGGTAAGATTCCCGATGTCATTGGATTGATGCAGGCCCTTGCCGTTCTGGATTTGAGTGAGAATGAGCTTGACGGTCCAATACCACCAATACTTGGCAACTTGTCCTACACAGGAAAATTGTATCTGCATGGAAACAAGTTGACTGGGCCAATTCCTCCCGAGCTGGGCAATATGTCGAAGCTTAGCTACTTGCAACTAAATGATAACCAGTTGGTTGGTACAATTCCTTCTGAACTCGGGAAGCTGGATCAGTTGTTTGAACTAAATCTTGCTAATAATTATCTTGAAGGACCTATCCCTCACAACATCAGTTCTTGCACTGCATTGAATCAATTCAATGTTCATGGAAACAATCTTAACGGATCAATCCCTTTGGGTTTCCAAAATCTGGAGAGCTTGACTTATTTGAACCTTTCAGCTAACAACTTCAAAGGCAGGATACCTGTTGAGCTGGGACGGATAGTAAACCTTGATACATTGGATCTATCTTGTAATCACTTCTTGGGTCCTGTTCCTGCTTCTATCGGTGATTTGGAGCACCTTCTTAGCCTCAACTTGAGCAATAACCAACTTGTTGGGCCATTGCCAGCAGAATTTGGGAATCTTCGAAGTGTTCAGATGATTGATATGTCATTCAACAACCTTTCGGGTAGCATACCCATGGAGTTGGGTCTACTGCAGAATATTATCTCCCTCATTTTGAACAATAACCATTTTCAAGGGAAAATACCTGATCGGCTGACTAATTGCTTTAGTCTTGCCAATTTGAACTTGTCATACAACAACTTATCTGGTATCTTACCTCCCATGAAAAATTTCTCTCGCTTCGAACCAAATAGCTTTATTGGTAATCCGCTGCTGTGTGGAAACTGGCTGGGTTCGATCTGTGGGCCCTACATGGAGAAATCTCGAGCAATGTTGTCTCGGACAGTGGTTGTTTGTATGTCATTTGGATTCATAATACTGTTGTCAATGGTTATGATTGCCGTTTACAAATCGAAGCAATTGGTGAAGGGTTCTGGCAAGACTGGGCAAGGTCCTCCAAATCTTGTGGTACTTCATATGGATATGGCTATTCACACCTTCGAGGACATTATGAGAAGTACTGAGAATCTAAGCGAGAAATACATTATTGGTTACGGAGCTTCGAGCACTGTGTACAAATGTTTATTGAAAAATTCCCGACCTATTGCAATTAAGCGACTTTACAATCACTATGCACACAATTTTCGGGAGTTTGAGACTGAACTCGGAACTATTGGTAGTATCCGACATAGAAATCTTGTTAGCCTTCATGGTTATTCACTATCTCCCTGTGGGAATCTCCTCTTCTATGACTACATGGAAAATGGTTCACTCTGGGATCTTCTTCACGGGACGGGTAAGAAGGTTAAACTAGATTGGGAAGCGCGTCTAAAGATTGCAGTTGGAGCTGCTCAAGGGCTTGCGTATCTTCACCATGATTGTAACCCCCGAATCATTCACCGGGATGTCAAGTCTTCAAATATTCTACTGGATGAAAACTTTGAGGCTCATCTTTCTGATTTCGGGATTGCCAAATGTATCCCAACTGCCAAAACACATGCATCGACTTATGTGCTTGGAACAATTGGGTACATTGATCCAGAGTATGCTCGGACCTCCCGGCTTAACGAAAAGTCTGATGTTTATAGCTTCGGCATTGTTCTTCTGGAACTACTGACTGGGAAGAAAGCTGTGGATGATGAATCCAATTTGCATCAGCTGATATTGTCCAAGATCAATAGTAATACTGTGATGGAAGCTGTTGATCCCGAGGTTTCAGTCACCTGCATTGATTTAGCCCATGTTAGAAAAACGTTCCAGCTCGCTCTCCTCTGCACAAAACACAATCCCTCCGAAAGGCCAACCATGCATGAAGTTTCACGAGTCTTGATCTCCCTCCAGCCACCACGACCTACTGTGAAACAAACTTCATTCCCCACGAAAACGTTGGATTACGCACAATACGTGATTGAAAAGGGTCAGAATCGAAACGCGAAAGGAGGGCAGGAGGAGCAGCAGAAGTCAGACGTGAATACTTCGGATGCTCGGTGGTTTGTTCAGTTTGGGGAAGTTATGTCCGAACAACACAGTTTGAATCAATAA 2985 42.98 MKLIPFLPWPNLHMVLLLLFFLSSPPLLYSSPVYSLPHNEGRALMSIKASFSNVANVLLDWDDDHNHDFCSWRGVFCDNVSLSVAALNLSNLNLGGEISPSIGDLRNLQSIDFQGNKLTGQIPDEIGNCGLLVHLDLSDNLLYGDIPFTVSKLKQLEFLNMKNNQLTGPIPSTLTQIPNLKTLDLARNQLTGEIPRLIYWNEVLQYLGLRGNFLTGSLSSDMCQLTGLWYFDVRGNNLTGSIPDSIGNCTSFEILDISYNQISGEIPYNIGFLQVATLSLQGNRLTGKIPDVIGLMQALAVLDLSENELDGPIPPILGNLSYTGKLYLHGNKLTGPIPPELGNMSKLSYLQLNDNQLVGTIPSELGKLDQLFELNLANNYLEGPIPHNISSCTALNQFNVHGNNLNGSIPLGFQNLESLTYLNLSANNFKGRIPVELGRIVNLDTLDLSCNHFLGPVPASIGDLEHLLSLNLSNNQLVGPLPAEFGNLRSVQMIDMSFNNLSGSIPMELGLLQNIISLILNNNHFQGKIPDRLTNCFSLANLNLSYNNLSGILPPMKNFSRFEPNSFIGNPLLCGNWLGSICGPYMEKSRAMLSRTVVVCMSFGFIILLSMVMIAVYKSKQLVKGSGKTGQGPPNLVVLHMDMAIHTFEDIMRSTENLSEKYIIGYGASSTVYKCLLKNSRPIAIKRLYNHYAHNFREFETELGTIGSIRHRNLVSLHGYSLSPCGNLLFYDYMENGSLWDLLHGTGKKVKLDWEARLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILLDENFEAHLSDFGIAKCIPTAKTHASTYVLGTIGYIDPEYARTSRLNEKSDVYSFGIVLLELLTGKKAVDDESNLHQLILSKINSNTVMEAVDPEVSVTCIDLAHVRKTFQLALLCTKHNPSERPTMHEVSRVLISLQPPRPTVKQTSFPTKTLDYAQYVIEKGQNRNAKGGQEEQQKSDVNTSDARWFVQFGEVMSEQHSLNQ* 995
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11224160 11230404 - CsaV3_5G014240.1 Csa05g01100 529487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01100 994 SMART serkin_6 658 925 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g01100 994 Gene3D Phosphorylase Kinase; domain 1 629 733 - -
Csa05g01100 994 Gene3D Ribonuclease Inhibitor 202 311 IPR032675 -
Csa05g01100 994 Gene3D Ribonuclease Inhibitor 37 201 IPR032675 -
Csa05g01100 994 ProSiteProfiles Leucine-rich repeat profile. 179 201 IPR001611 GO:0005515
Csa05g01100 994 Gene3D Transferase(Phosphotransferase) domain 1 734 940 - -
Csa05g01100 994 ProSitePatterns Serine/Threonine protein kinases active-site signature. 779 791 IPR008271 GO:0004672|GO:0006468
Csa05g01100 994 Pfam Leucine rich repeat N-terminal domain 38 78 IPR013210 -
Csa05g01100 994 SUPERFAMILY L domain-like 39 321 - -
Csa05g01100 994 SUPERFAMILY Protein kinase-like (PK-like) 635 924 IPR011009 -
Csa05g01100 994 Pfam Protein kinase domain 661 920 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g01100 994 Gene3D Ribonuclease Inhibitor 312 584 IPR032675 -
Csa05g01100 994 SMART LRR_typ_2 512 536 IPR003591 -
Csa05g01100 994 SMART LRR_typ_2 225 249 IPR003591 -
Csa05g01100 994 SMART LRR_typ_2 464 487 IPR003591 -
Csa05g01100 994 SMART LRR_typ_2 296 320 IPR003591 -
Csa05g01100 994 SMART LRR_typ_2 153 176 IPR003591 -
Csa05g01100 994 SMART LRR_typ_2 177 201 IPR003591 -
Csa05g01100 994 SMART LRR_typ_2 416 440 IPR003591 -
Csa05g01100 994 SMART LRR_typ_2 344 368 IPR003591 -
Csa05g01100 994 SMART LRR_typ_2 105 129 IPR003591 -
Csa05g01100 994 ProSiteProfiles Protein kinase domain profile. 658 934 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g01100 994 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 31 965 - -
Csa05g01100 994 ProSitePatterns Protein kinases ATP-binding region signature. 664 686 IPR017441 GO:0005524
Csa05g01100 994 Pfam Leucine rich repeat 442 501 IPR001611 GO:0005515
Csa05g01100 994 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ERL1-RELATED 31 965 - -
Csa05g01100 994 Pfam Leucine Rich repeat 178 193 IPR001611 GO:0005515
Csa05g01100 994 Pfam Leucine Rich repeat 248 265 IPR001611 GO:0005515
Csa05g01100 994 SUPERFAMILY L domain-like 319 575 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01252 Csa-Chr2:12258510 Csa05g01100 Csa-Chr5:11224160 1.00E-18 dispersed
Csa04g02582 Csa-Chr4:25361069 Csa05g01100 Csa-Chr5:11224160 0 dispersed
Csa05g01100 Csa-Chr5:11224160 Csa01g00996 Csa-Chr1:6196854 4.94E-84 dispersed
Csa05g01188 Csa-Chr5:12316329 Csa05g01100 Csa-Chr5:11224160 7.45E-06 dispersed
Csa07g01274 Csa-Chr7:12671210 Csa05g01100 Csa-Chr5:11224160 1.70E-32 dispersed
Csa07g01322 Csa-Chr7:13122826 Csa05g01100 Csa-Chr5:11224160 1.72E-122 dispersed
Csa05g01100 Csa-Chr5:11224160 Csa06g03068 Csa-Chr6:26350693 4.06E-162 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78238 PF00069 Pkinase 2.10E-41 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01100 K20718 - csv:101213139 1928.68