Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01122 ATGATTTCTTCTTGGAGACGCCGGAGGGCTACTCGGCGAATGGCAAGGGGTGGTCTAAGCCACACGATCGAGTTGACGATTCCGACCCATTTTCGATGCCCGATATCGCTCGACTTGATGAAAGATCCAGTGACTTTGTCGACTGGTATCACCTATGATCGAGCTAGCATTGAGACCTGGATTGAAGGAGGGAATTTCACCTGCCCTTTCACCAACCAACCATTGCAAACTATTGATTCTATTCCTAATCATAACATAAGGAAGATGATTCAAGATTGGTGTGTTGAGAATAGAGCTTATGGGATTGAGAGGATTCCGACACCGAGGGTTCCGGCTAGTCCGGCACAAGTTCGGGAAATTCTTGAGAAGATGGCCGCTGCTGCACGGCGAGGGGATTGTGATGGATGCAAGTCCATGGTGGAGAAGATCAAGAAATTGGGAAAAGAAAGTGAAAGGAACAAGAAATGCATTATTGCCAATGGAACAGGTAATACATTATCATCAATATTCGAAGCGTTTTCGAATCCCGAAACATTCGAGAAAAGAATCGAAATTTTAGAGGAAATTTTATCAGCCATGACAGTGGCGTTCCCTCTTCAAGAAGAATCCATTAAACACTTGAAATCGGAAACTTCATTACAATCATTGGTATGGTTTCTAAAAGGAGGAGACATTTCAGGAAGAAGAAATTCAGTTTTGGTATTGAAAGAGATAATTTCATCATACCCAGAAAAAGTGGATGAATTAGGTGAAATCCAAGGAGCATTAGAGGGTCTTATTAAGCTCATAAAAGATCCAATTTGCTCATCTTCAAGAAAAGCTTCACTTTTTATAACATATCATGTTATAGCCTCAACTTCTTCTTCTTCCAATCGGGAGAGATTCACAAAAGAACTTCTTCAAATGGGGTTGGTTTCGTTGCTACTCGAAACCCTAGTTGACGCCGAGAGAAGCGTATGTGAGAGAGCGCTGGGAGCGTTCGACGGCATTTGCGAGACCAAACAAGGAAGAGAAGAGGCGTACGCCCATGCTCTAACGATGCCCGTGATCGTGAAAAAGATACTTAGAGTATCGGATTTAGCAACCGAATTATCGGTGTGCATTGTTTGGAAGCTTGTAAAACATGAGAGTAAAGAGGAAGAAGATGGAGGGATTAAGGTAGAAGCACTTCAAGTGGGAGCATTTCAAAAGCTTTTGTTGTTGTTGCAAGTTGGTTGTAGTGAATGGACAAAGGAGAAAGCAACAGAGCTGTTAAAACTCTTGAATAATCTTCATAGGGATAGGTTAGAATGTATTGATTCTTTAGATTTTAAGGACCTCAAAAGAACATTTTGA 1335 41.72 MISSWRRRRATRRMARGGLSHTIELTIPTHFRCPISLDLMKDPVTLSTGITYDRASIETWIEGGNFTCPFTNQPLQTIDSIPNHNIRKMIQDWCVENRAYGIERIPTPRVPASPAQVREILEKMAAAARRGDCDGCKSMVEKIKKLGKESERNKKCIIANGTGNTLSSIFEAFSNPETFEKRIEILEEILSAMTVAFPLQEESIKHLKSETSLQSLVWFLKGGDISGRRNSVLVLKEIISSYPEKVDELGEIQGALEGLIKLIKDPICSSSRKASLFITYHVIASTSSSSNRERFTKELLQMGLVSLLLETLVDAERSVCERALGAFDGICETKQGREEAYAHALTMPVIVKKILRVSDLATELSVCIVWKLVKHESKEEEDGGIKVEALQVGAFQKLLLLLQVGCSEWTKEKATELLKLLNNLHRDRLECIDSLDFKDLKRTF* 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11451621 11453322 + CsaV3_5G014460.1 Csa05g01122 529509

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01122 444 CDD RING-Ubox_PUB 31 73 IPR045210 -
Csa05g01122 444 SMART Ubox_2 30 93 IPR003613 GO:0004842|GO:0016567
Csa05g01122 444 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 9 444 - -
Csa05g01122 444 Gene3D - 115 423 IPR011989 -
Csa05g01122 444 Pfam U-box domain 27 98 IPR003613 GO:0004842|GO:0016567
Csa05g01122 444 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 103 IPR013083 -
Csa05g01122 444 PANTHER WDSAM1 PROTEIN 9 444 IPR045185 GO:0061630
Csa05g01122 444 SUPERFAMILY RING/U-box 23 103 - -
Csa05g01122 444 ProSiteProfiles U-box domain profile. 26 100 IPR003613 GO:0004842|GO:0016567
Csa05g01122 444 SUPERFAMILY ARM repeat 198 421 IPR016024 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01122 - - - csv:101213919 850.892
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01844 Csa-Chr3:14148559 Csa05g01122 Csa-Chr5:11451621 3.82E-69 dispersed
Csa03g02112 Csa-Chr3:17706762 Csa05g01122 Csa-Chr5:11451621 1.79E-155 dispersed
Csa03g03495 Csa-Chr3:31295374 Csa05g01122 Csa-Chr5:11451621 3.33E-56 dispersed
Csa05g01122 Csa-Chr5:11451621 Csa01g00838 Csa-Chr1:5256821 1.70E-29 dispersed
Csa06g02795 Csa-Chr6:24372700 Csa05g01122 Csa-Chr5:11451621 7.88E-41 dispersed
Csa05g01122 Csa-Chr5:11451621 Csa06g02471 Csa-Chr6:21988228 2.27E-58 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g531 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0725 Cone19ag0724 . . . . Chy10g00211 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01122 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010787 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g01122 Csa_Chr05 FPKM 4.659406 5.397461 2.250267 2.844397 18.490496 11.044391 18.243172 0.424359 0.515567 0.292149