Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01126 ATGTCGATGAGAACTGTCAAAGTCAGCAATATCTCAAAACTTACTTCTGAGAGAGATATCAAAGAATTCTTTTCATTCTCTGGGGAAATCCTTTACGTTGAAATGCAAAGAGAAAGTGAGAACACTCAGGTTGCTTATGTTACATATAAGGATTCTCAAGGAGCTGATACTGCAATACTTTTGACAGGAGCTAAAATTGGTGATCTATCTGTAACAATTACTTTGGTTGAGAATTACCATCTTCCACCTGAAGCAATGTCGTCAATCCTGGATAAAAGGCAAACGGTTACTGGGATTGCTCCGAATCAGGCTGAAGACGTCGTAAGTACAATGCTTGCGAAGGGTTTCATCTTGGGGAAGGATGCTCTAAACAAAGCAAAAGCATTCGACGAACGACTCCAATTGACATCAAATGCTTCTGCAACCGTAGCTTCCATTGACCGCAAGATGGGAATAACTGAGAAAATAACCGCAGGCACAGCAGTGGTGAATGAAAAGGTCAGGGAGATGGATGAAATGTTCCAAGTTAGGGAGAAGACGAAATCCGCGCTTGCCGTTGCAGAGCAAAAGGCAACAAGCGCGGGAACAGCGCTGATGAGCAATTATTATGTGTTAACTGGAGCAGCATGGTTTTCAAATGCTGTAACTGCAGTTACAAAAGCTGCTGAGGAAGTGACCCAAATGACAAAGGTAAAAGTCGAGAAAGCCGAGGAGGAGAAAAAGGAGAGTATATATCGGGAAAGAACGGGGATTATTAGTAACTTCGCCGAGCTCCATCTGGACGAGCCTTTACCTGGGGAGCCTGCTATTGTTCCAGTTAATTCAGCAGATAGATAG 837 43.25 MSMRTVKVSNISKLTSERDIKEFFSFSGEILYVEMQRESENTQVAYVTYKDSQGADTAILLTGAKIGDLSVTITLVENYHLPPEAMSSILDKRQTVTGIAPNQAEDVVSTMLAKGFILGKDALNKAKAFDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVREKTKSALAVAEQKATSAGTALMSNYYVLTGAAWFSNAVTAVTKAAEEVTQMTKVKVEKAEEEKKESIYRERTGIISNFAELHLDEPLPGEPAIVPVNSADR* 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11496294 11503340 + CsaV3_5G014500.1 Csa05g01126 529513

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01126 278 Gene3D - 2 74 IPR012677 -
Csa05g01126 278 SMART rrm1_1 5 74 IPR000504 GO:0003723
Csa05g01126 278 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 78 IPR000504 GO:0003723
Csa05g01126 278 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 2 277 - -
Csa05g01126 278 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7 68 IPR000504 GO:0003723
Csa05g01126 278 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 2 277 - -
Csa05g01126 278 SUPERFAMILY RNA-binding domain, RBD 3 78 IPR035979 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01126 - - - csv:101203394 512.301
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00147 Csa-Chr3:1140955 Csa05g01126 Csa-Chr5:11496294 1.81E-96 dispersed
Csa04g01117 Csa-Chr4:9455930 Csa05g01126 Csa-Chr5:11496294 2.95E-62 dispersed
Csa05g01126 Csa-Chr5:11496294 Csa05g02975 Csa-Chr5:30068479 1.63E-32 dispersed
Csa05g01126 Csa-Chr5:11496294 Csa05g02433 Csa-Chr5:26303073 2.11E-39 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g525 . . . . . . Bma14g01921 . . . . Cma04g00084 . Car04g00085 . . . . . . . . . . . . . . . . . . . Cone6ag0347 . . . Chy10g00214 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01126 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010782 0 1 0 1 1 1 2 1 1 1 1 1 2 0 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g01126 Csa_Chr05 FPKM 20.599625 24.198528 25.541708 24.289783 13.683156 12.988073 15.814687 18.47002 19.456083 20.892843