Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01127 ATGAAATCCAAGAAACGAAGACCAAACCCCAAACCTCAATCCTTCTCTCCTCCCAAGAACAAGAAGCTCCGTTCTCAGCTCCCACGCCGCAAACGCCCTCTGATTTTACCCTTTTTCTGCTGTTATTTGGATTCCGATTCCCCCCCTCCCTCCACCACTTTTTCTTTTGCTTCTTCTTCTTCTTTCACTGCCGCACAATCCACCTCCACGTCCTTCTTCCCAACCGGACCTGAGGTCTCTAGCCACCTCAACCCCCTGAATTTTAGGAAGACACGATTTGATTCGAACAAGGAGGTTGGAGTAGGGAGTAATGAGCAAGTGTCTGAATCCTCTTGTGTTGAATCTAATTCTGGACTCGATTTTGGTGTTTCCGGACCAAGCACTACTTCCAAGTTGAAGAATAGGAGAACTATTCACGGAAATGAAGATCCAATTGATCCAGCGGAGAATGGAGTTGATGCCTCGTCGAAGCTTTGTGGAAAGGGAGCTGTGGTACTCACTTCTTGTGTAGAGTCTTGTGCTGAATCTATCTTTCAGAGTGTTTGTTCGTTCGAAGAGAAAGGATTAGAGGTTGAAGATAACAGACTATGGGAATTTCAGTTACCTGAGCTACAGAAAAACGAAATTAATAAAACTTTCACTGTTTCGAAGTCGGATTCGACGATAGAACAGTGGCCTGGCAGCTTGAAGATTGAATCGGACCTTGCTTGCACAGAGCAATTCTCTTACGATGATGTTTCGGAATACTTAAGCCAGCCGTTGTCGCTTCAGTCAACTATTCTATTGGAGATGTCTGATGACTGCTCAGATTACACTCCATCAATTTTCTTGGAATCCGGAAGCGAATTTTCAGAGAAATCGAACGAAGACGCAGCTCCTACATCGACATTTACCATGTTGCTGCAGTACAGACGCGAATTTATAAGCTTAAATTTCTCTCACATCAGAACTAGCTCGTCTATTGAAGAAGAAGAAGTAGATCAATCTACGATTTTGAGATTTGAAGAATTGGACGATGAAGAAGCCTATCGAATGTTCAGAAATAGAGAAAGACGCCAACTGATTATTTGCGACTACATAGAGGAATATCGGTCCACAACGGATTATGGCGATTTCATTCTTCAGCAACGGTCAAATATGGTCCAGTGGATAGTTGAACGATCTAGAGAAAAGAAACTTCATCAGGAGACGACATTTTTAGGAGTTACCCTTCTGGACCAGATTCTGAGCAAAGGATTCTTCAAAGCTGAAACTCACCTTCAAATTCTAGGCATAGCATGTCTAACTTTGGCGACTAGAATTGAAGAAAATCAGTCATACAGCTGGTTACAGCAAAGGAATATCCATGTAGGGAGCAACACGTACAGAAGATCAAAAGTTGTTGGCATGGAATGGCTCGTTGAAGAAGTTCTAAAGTTCCATTGTTTCTTGCCAACTGTTTACAATTTCTTGTGGTTCTACCTGAAAGCTGCTGGAGCTAACTCAGATTTGGAGAATCGAGCTAAGAACTTCGCAGTGCTCGTTCTTGCAGAAAAAGTCCAGTTTTGTTATTTCCCTTCAACGATTGCAGCTGCAGTTGTCATCTTGGCGTCCTTAGGAGAAAAACAAGATGCACCAAGTGAACGAGTCATTGAGATACACGTCAGAACAGAAAACGATGATCTCCCTGAATGTATCGAGAGCTTGGAGTGGCTATTAAAGTTTCTATGA 1710 42.81 MKSKKRRPNPKPQSFSPPKNKKLRSQLPRRKRPLILPFFCCYLDSDSPPPSTTFSFASSSSFTAAQSTSTSFFPTGPEVSSHLNPLNFRKTRFDSNKEVGVGSNEQVSESSCVESNSGLDFGVSGPSTTSKLKNRRTIHGNEDPIDPAENGVDASSKLCGKGAVVLTSCVESCAESIFQSVCSFEEKGLEVEDNRLWEFQLPELQKNEINKTFTVSKSDSTIEQWPGSLKIESDLACTEQFSYDDVSEYLSQPLSLQSTILLEMSDDCSDYTPSIFLESGSEFSEKSNEDAAPTSTFTMLLQYRREFISLNFSHIRTSSSIEEEEVDQSTILRFEELDDEEAYRMFRNRERRQLIICDYIEEYRSTTDYGDFILQQRSNMVQWIVERSREKKLHQETTFLGVTLLDQILSKGFFKAETHLQILGIACLTLATRIEENQSYSWLQQRNIHVGSNTYRRSKVVGMEWLVEEVLKFHCFLPTVYNFLWFYLKAAGANSDLENRAKNFAVLVLAEKVQFCYFPSTIAAAVVILASLGEKQDAPSERVIEIHVRTENDDLPECIESLEWLLKFL* 570
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11499822 11506322 - CsaV3_5G014510.1 Csa05g01127 529514

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01127 569 Gene3D - 368 470 - -
Csa05g01127 569 PANTHER CYCLIN-SDS 1 560 - -
Csa05g01127 569 SUPERFAMILY Cyclin-like 337 474 IPR036915 -
Csa05g01127 569 SUPERFAMILY Cyclin-like 478 564 IPR036915 -
Csa05g01127 569 PANTHER CYCLINS 1 560 IPR039361 -
Csa05g01127 569 Gene3D - 471 568 - -
Csa05g01127 569 CDD CYCLIN 477 558 IPR013763 -
Csa05g01127 569 CDD CYCLIN 377 467 IPR013763 -
Csa05g01127 569 Pfam Cyclin, C-terminal domain 478 563 IPR004367 -
Csa05g01127 569 Pfam Cyclin, N-terminal domain 342 474 IPR006671 -
Csa05g01127 569 MobiDBLite consensus disorder prediction 124 151 - -
Csa05g01127 569 Coils Coil 568 569 - -
Csa05g01127 569 SMART cyclin_7 382 469 IPR013763 -
Csa05g01127 569 SMART cyclin_7 482 567 IPR013763 -
Csa05g01127 569 MobiDBLite consensus disorder prediction 1 29 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01127 K21777 CCNB; G2/mitotic-specific cyclin-B, other - csv:101214640 1093.95
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g01127 Csa-Chr5:11499822 Csa06g02128 Csa-Chr6:19014362 3.02E-18 dispersed
Csa05g01127 Csa-Chr5:11499822 Csa02g02345 Csa-Chr2:20822634 2.30E-16 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g524 . . . . . . Bma14g01920 . . . . Cma04g00085 . Car04g00086 . . . . . . . . . . . . . . . . . . . Cone6ag0348 Cone9ag0381 . . Chy10g00215 . . Blo11g00966 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01127 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008679 0 1 1 1 1 1 2 1 1 1 1 1 2 0 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g01127 Csa_Chr05 FPKM 10.983253 11.972715 8.53952 10.822825 6.717343 6.65231 7.376279 11.299873 11.85718 12.778817