Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01138 ATGGGCAGCGACGATGGTTTTCTGAACAACTCCGGAAACGAGTCGCCATGGTCCAGCGGCCTCTGTGATTGCTTCTCCGACATGGGATCATGTTGCTGTACAGCATGGTGTCCATGTGTGCCATTTGGGCAAGCCTCAGAGATCATAGATGAAGGATCAACTTCTTGTTTTGGTAACGGATTAATCTTTTGTCTAATTGCTACCTTTACACCCTGCATTTGCCTTTACACTTGTTCGTATCGATCTCGATTGAGGAAAAAATACAATCTTAAAGAAACACCATGCAACGATTGTTGCGTTCATTGTTGGTGTTGGAGTTGTGCTATGTGTCAAGAGTATCGTGAGCTTCAAAACCGAGGTTTCAACATGCATATCGGTTGGCAAGAAAATATGCAGAGAGGAAACAAGGGAATAGAGATCCCACCTACTGTCCCAGGACAAATGAAACGTTGA 453 44.37 MGSDDGFLNNSGNESPWSSGLCDCFSDMGSCCCTAWCPCVPFGQASEIIDEGSTSCFGNGLIFCLIATFTPCICLYTCSYRSRLRKKYNLKETPCNDCCVHCWCWSCAMCQEYRELQNRGFNMHIGWQENMQRGNKGIEIPPTVPGQMKR* 151
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11658345 11660812 - CsaV3_5G014620.1 Csa05g01138 529525

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01138 150 PANTHER DUF614 FAMILY PROTEIN-RELATED 12 149 IPR006461 -
Csa05g01138 150 PANTHER PROTEIN PLANT CADMIUM RESISTANCE 1-RELATED 12 149 - -
Csa05g01138 150 Pfam PLAC8 family 17 115 IPR006461 -
Csa05g01138 150 TIGRFAM A_thal_Cys_rich: uncharacterized Cys-rich domain 16 118 IPR006461 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01138 - - - csv:101204367 346.28
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00590 Csa-Chr3:5088864 Csa05g01138 Csa-Chr5:11658345 1.00E-30 dispersed
Csa03g03653 Csa-Chr3:32535115 Csa05g01138 Csa-Chr5:11658345 7.56E-21 dispersed
Csa05g01138 Csa-Chr5:11658345 Csa05g02592 Csa-Chr5:27190997 1.72E-20 dispersed
Csa05g01138 Csa-Chr5:11658345 Csa03g00063 Csa-Chr3:533079 1.51E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g470 . . . . . . Bma14g01899 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01138 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001588 3 2 1 2 1 1 1 1 0 2 1 1 3 3 3 3 0 6 3 1 2 1 1 2 2 3 2 2 1 13 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g01138 Csa_Chr05 FPKM 7.69996 8.066233 0.560229 0.471824 31.402435 32.08683 33.452114 0.0 0.0 0.0