Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01141 ATGTCAACATTCTTACATCAACAATGTTACTTGCAATTAAATTTTAATAATCAAACAAAAATCAGCAACTTCTTCTTCCTCGATTCCTTTTTCTTATATATTTCTCATCTCCATAAATTCAACCATCAAATTCAAGATTATGCCAACACTTTCGAAATGAACAACGATAATCGTAGTGGACTTCTTCGAATTCGCCTCCTCCGAGGCCACAATCTCGCCATTCGCGATGCTCCAACTCGTAGCAGCGATCCCTACGTCGTCATCACCTCCGCTAACCAGAAATTCAAATCACGCGTGGTGAAAAAAAATTGCAATCCAGAATGGAACGAGGAATTCACACTTTCGGTTACCGATGTCAACACACCAATCAAATTAGCAGTGTTTGACAAAGATAGATTCACGAAAGACGATGGAATGGGGGATGCAGAGATCGACATAAAACCATACATGGAATGTTTGAATATGGGATTAGAGAATCTACCAAATGGTTGTGTAGTGAAAAGGGTTCAACCAAGCAGATCAAACAGCCTTGCAGATGAAAGCCCTTGTGTTTGGAATGACGGGAAGATCGTTCAAGATATGACTCTTAGATTGCAGAATGTTGAATGTGGTGAAATCATGATTCAACTTCAATTGTTCAATGTTTCTATTTTCAGAGGCCGAAGAACCTACTCTTTAGCATGA 684 39.18 MSTFLHQQCYLQLNFNNQTKISNFFFLDSFFLYISHLHKFNHQIQDYANTFEMNNDNRSGLLRIRLLRGHNLAIRDAPTRSSDPYVVITSANQKFKSRVVKKNCNPEWNEEFTLSVTDVNTPIKLAVFDKDRFTKDDGMGDAEIDIKPYMECLNMGLENLPNGCVVKRVQPSRSNSLADESPCVWNDGKIVQDMTLRLQNVECGEIMIQLQLFNVSIFRGRRTYSLA* 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11692393 11694431 + CsaV3_5G014650.1 Csa05g01141 529528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01141 227 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 57 215 IPR035892 -
Csa05g01141 227 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 10 57 217 - -
Csa05g01141 227 ProSiteProfiles C2 domain profile. 43 162 IPR000008 -
Csa05g01141 227 SMART C2_3c 61 158 IPR000008 -
Csa05g01141 227 Pfam C2 domain 61 148 IPR000008 -
Csa05g01141 227 CDD C2_ArfGAP 60 204 - -
Csa05g01141 227 Gene3D C2 domain 38 216 IPR035892 -
Csa05g01141 227 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 57 217 IPR044562 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g01141 Csa-Chr5:11692393 Csa05g02017 Csa-Chr5:23557147 1.19E-77 dispersed
Csa05g01141 Csa-Chr5:11692393 Csa01g00717 Csa-Chr1:4552877 8.65E-65 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01141 - - csv:101205028 456.447