Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa05g01141 | ATGTCAACATTCTTACATCAACAATGTTACTTGCAATTAAATTTTAATAATCAAACAAAAATCAGCAACTTCTTCTTCCTCGATTCCTTTTTCTTATATATTTCTCATCTCCATAAATTCAACCATCAAATTCAAGATTATGCCAACACTTTCGAAATGAACAACGATAATCGTAGTGGACTTCTTCGAATTCGCCTCCTCCGAGGCCACAATCTCGCCATTCGCGATGCTCCAACTCGTAGCAGCGATCCCTACGTCGTCATCACCTCCGCTAACCAGAAATTCAAATCACGCGTGGTGAAAAAAAATTGCAATCCAGAATGGAACGAGGAATTCACACTTTCGGTTACCGATGTCAACACACCAATCAAATTAGCAGTGTTTGACAAAGATAGATTCACGAAAGACGATGGAATGGGGGATGCAGAGATCGACATAAAACCATACATGGAATGTTTGAATATGGGATTAGAGAATCTACCAAATGGTTGTGTAGTGAAAAGGGTTCAACCAAGCAGATCAAACAGCCTTGCAGATGAAAGCCCTTGTGTTTGGAATGACGGGAAGATCGTTCAAGATATGACTCTTAGATTGCAGAATGTTGAATGTGGTGAAATCATGATTCAACTTCAATTGTTCAATGTTTCTATTTTCAGAGGCCGAAGAACCTACTCTTTAGCATGA | 684 | 39.18 | MSTFLHQQCYLQLNFNNQTKISNFFFLDSFFLYISHLHKFNHQIQDYANTFEMNNDNRSGLLRIRLLRGHNLAIRDAPTRSSDPYVVITSANQKFKSRVVKKNCNPEWNEEFTLSVTDVNTPIKLAVFDKDRFTKDDGMGDAEIDIKPYMECLNMGLENLPNGCVVKRVQPSRSNSLADESPCVWNDGKIVQDMTLRLQNVECGEIMIQLQLFNVSIFRGRRTYSLA* | 228 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 11692393 | 11694431 | + | CsaV3_5G014650.1 | Csa05g01141 | 529528 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa05g01141 | 227 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 57 | 215 | IPR035892 | - | |
Csa05g01141 | 227 | PANTHER | PROTEIN C2-DOMAIN ABA-RELATED 10 | 57 | 217 | - | - | |
Csa05g01141 | 227 | ProSiteProfiles | C2 domain profile. | 43 | 162 | IPR000008 | - | |
Csa05g01141 | 227 | SMART | C2_3c | 61 | 158 | IPR000008 | - | |
Csa05g01141 | 227 | Pfam | C2 domain | 61 | 148 | IPR000008 | - | |
Csa05g01141 | 227 | CDD | C2_ArfGAP | 60 | 204 | - | - | |
Csa05g01141 | 227 | Gene3D | C2 domain | 38 | 216 | IPR035892 | - | |
Csa05g01141 | 227 | PANTHER | PROTEIN C2-DOMAIN ABA-RELATED 4 | 57 | 217 | IPR044562 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa05g01141 | Csa-Chr5:11692393 | Csa05g02017 | Csa-Chr5:23557147 | 1.19E-77 | dispersed | |
Csa05g01141 | Csa-Chr5:11692393 | Csa01g00717 | Csa-Chr1:4552877 | 8.65E-65 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa05g01141 | - | - | csv:101205028 | 456.447 |