Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01147 ATGACGAAGTCCAAGAGTTTCGTACAAAATCTCATCAAACAATTCAGATTCGGCTCCTCAAGAGATAGGCAGGGTGAGGATGATTTGGAGGAGATTGCTGCTAAGGAACAGAAGCTTATTCAGTTTGATGCCTTAGTTGAAGCTACCAACAACTTTCACTCCACCAACAAGCTTGGCCAAGGCGGATTTGGTCCTGTTTACAAGGGGAAGTTAAAGGATGGAAGAGTTATTGCAGTCAAGAAGTTGTCACTTTATTCAAAACAAGGGAGAAAAGAGTTTATGACTGAGGCTAAATTGTTGGCTCGAGTGCAGCACAGAAATGTCGTCAATTTGTTGGGATACTGTGTGCATGGTGCAGAGAAACTACTGGTTTACGAATACGTCATGAATGAGAGCCTCGACAAGCTTCTCTTTACAGAATCCAGCAGACGAGGAGAACTTGATTGGAAGAGGAGATATGACATAATCTTTGGCGTAGCACGAGGGTTGCAATATCTTCATGTAGACTCACATAACGTCATTATCCATCGTGACATAAAGGCTAGTAACATTTTGTTGGATGACAAATGGGTTCCTAAAATTGCGGATTTTGGCATGGCTCGTCTCTTCCCTGAAGATCAAACTCATGTCAATACTCGAGTTGCTGGTACAAATGGATATATGGCTCCCGAATATGTAATGCACGGGCATCTATCAGTAAAGGCAGACGTTTTTAGCTTTGGAGTTTTGGTTTTGGAACTTATAAGTGGCCAGCGAAATTCGTCATTTACTTCATTTATGGATGCGGAGAATCTACTTGATTGGGCTTACAAACTGTACAAGAAGGGAAGAAGCTTGGAGATCATGGACCCAACATTAGCATCATCAGCTGTTCCTGACCAAGTTACAATGTGCATTCAAATAGGATTGCTCTGCACACAAGGTGATTCACACCTACGGCCGACCATGCCACGTGTAGTTTTAATTCTTTCAAAGAGACCTGGTAATTTGGAGGAACCAACGAGACCGGGAATGCCCGGTTCTCGGTATAGAAGAACTCGTAGGACAAGTGCATCGTCCTCCATTGTGGGTACTTCGGGAACTTCGTCTGGTGTATCCGACTCCTATGCTTTGACAACCAATACTACTGGAACTATAACTGCTACGGCGACCGCAACCGCAACTGCAAATGAAGTTGCTTCTAGCTCTTCTCCAATTAGTCGAAGATACGATACTCGTGGGAAACGTCCAATAGAAGGTTAG 1242 43.64 MTKSKSFVQNLIKQFRFGSSRDRQGEDDLEEIAAKEQKLIQFDALVEATNNFHSTNKLGQGGFGPVYKGKLKDGRVIAVKKLSLYSKQGRKEFMTEAKLLARVQHRNVVNLLGYCVHGAEKLLVYEYVMNESLDKLLFTESSRRGELDWKRRYDIIFGVARGLQYLHVDSHNVIIHRDIKASNILLDDKWVPKIADFGMARLFPEDQTHVNTRVAGTNGYMAPEYVMHGHLSVKADVFSFGVLVLELISGQRNSSFTSFMDAENLLDWAYKLYKKGRSLEIMDPTLASSAVPDQVTMCIQIGLLCTQGDSHLRPTMPRVVLILSKRPGNLEEPTRPGMPGSRYRRTRRTSASSSIVGTSGTSSGVSDSYALTTNTTGTITATATATATANEVASSSSPISRRYDTRGKRPIEG* 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11773292 11778374 - CsaV3_5G014710.1 Csa05g01147 529534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01147 413 MobiDBLite consensus disorder prediction 345 365 - -
Csa05g01147 413 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 3 375 - -
Csa05g01147 413 MobiDBLite consensus disorder prediction 386 401 - -
Csa05g01147 413 ProSitePatterns Serine/Threonine protein kinases active-site signature. 174 186 IPR008271 GO:0004672|GO:0006468
Csa05g01147 413 Gene3D Phosphorylase Kinase; domain 1 15 127 - -
Csa05g01147 413 Gene3D Transferase(Phosphotransferase) domain 1 129 332 - -
Csa05g01147 413 MobiDBLite consensus disorder prediction 328 365 - -
Csa05g01147 413 CDD STKc_IRAK 58 325 - -
Csa05g01147 413 ProSiteProfiles Protein kinase domain profile. 52 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g01147 413 SMART serkin_6 52 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g01147 413 SUPERFAMILY Protein kinase-like (PK-like) 37 323 IPR011009 -
Csa05g01147 413 PANTHER RECEPTOR-LIKE KINASE 3 375 - -
Csa05g01147 413 MobiDBLite consensus disorder prediction 386 413 - -
Csa05g01147 413 Pfam Protein kinase domain 52 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g01147 Csa-Chr5:11773292 Csa03g04115 Csa-Chr3:36063471 2.94E-105 dispersed
Csa05g01147 Csa-Chr5:11773292 Csa06g03569 Csa-Chr6:28918339 1.24E-103 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78239 PF00069 Pkinase 1.20E-48 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01147 - - csv:101205738 749.969