Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01180 ATGGGAGCCCCATTTCAATGGAGTTCATCTCTTCACACTGCTTCAATCAACCTCAAATTTCCCATTTTTCCATCCTCCACATCCAATTTCATTTTCTATTACTGCAAACGATCTCCTGTGATTGATTCCGCAACTCGTCGTTGCGCTGTTTATGCTCAAAACTCCAATTCCCCGCGGCCCAAGAATTCGAAATCGGTCGTTCTTGGAGATTGCCAAGGGCATGAGCTTGTTCGGGTCTCTTCTAATCCGATTCGACCGCGTAACAGTGTGATTCTCTCTTTGGTGTCTTTATTTGATAAGCGTTCTCTTTGGCGAAGGATCTTTTTTGCCTCGAAGAAAGTTAGGAGTATCATTTTGCTCAACGTCGTCACAATTGTTTATGCTAGCAGTATTCCAGTTGTGAAAGAGGTTGAAGAATTAGTGGATCCTGCAACCTTCAATGTTGTACGGTTTGCCATGACTGCTATTCCATTTGTTCCACTTGTATTGGATAAATGGGATGATGTTGAGATCCGCGATGCTGGAATCGAGTTAGGTTTCTGGGTTAGTTTAGGGTACTTGATGCAGGCATTTGGACTTATAACATCTGATGCTGGGCGAGCATCCTTCATATCAATGCTGACGGTACTCGTAGTTCCTTTACTTGATGGACTTTTAGGGGCCATTGTTCCTGCTCGTACCTGGTTCGGAGCTCTCATGTCAGTTGTTGGAGTCGCTATGCTTGAATCCAGTGGATCCCCTCCTTGTGTGGGAGATCTTTTGAACTTCATGAGTGCAATATTTTTCGGTGTTCATATGCTAAGAACAGAGCATATTTCAAGACGTATAGATAAGGATAAATTCTTGCCACTCCTTGCATACGAGGTTTGTGTTGTTTCTATTCTGTCAATCCTGTGGTATTTTATTTGGAGATGGATTAATGGAACGGAAACAATTAGTGAGTCATGGAATTGGAAAACATATTTAGATTGGGTGTTCATGTTTCCTTGGGTACCTGCTCTGTACACAGGCTTATTGTCCACTGGTTTTTGCCTGTGGCTAGAGATGGCTGCCATGTGCGATGTATCTGCCACCGAAACTGCCATTATTTACAGCTTGGAGCCAGTTTGGGGTGGTAGTTTTGCCTGGATCCTTCTTGGTGAAAGGTGGGGATTGACCGGCTGGATTGGTGCTGCCCTAGTGCTAGGTGGAAGCCTAACAGTGCAGATACTTGCATCATCTTCAACAAAATCTTGCAAAGATGAGACAAGCAAAAACAAGGAATTCCATGGCCTATTGAGCTCGTCTGATGAACACAGTTTGACGACATCCCCAATCGTTATAACAAGAGTCAAGAACATTGCAGATCATTTGAAGTAA 1359 43.56 MGAPFQWSSSLHTASINLKFPIFPSSTSNFIFYYCKRSPVIDSATRRCAVYAQNSNSPRPKNSKSVVLGDCQGHELVRVSSNPIRPRNSVILSLVSLFDKRSLWRRIFFASKKVRSIILLNVVTIVYASSIPVVKEVEELVDPATFNVVRFAMTAIPFVPLVLDKWDDVEIRDAGIELGFWVSLGYLMQAFGLITSDAGRASFISMLTVLVVPLLDGLLGAIVPARTWFGALMSVVGVAMLESSGSPPCVGDLLNFMSAIFFGVHMLRTEHISRRIDKDKFLPLLAYEVCVVSILSILWYFIWRWINGTETISESWNWKTYLDWVFMFPWVPALYTGLLSTGFCLWLEMAAMCDVSATETAIIYSLEPVWGGSFAWILLGERWGLTGWIGAALVLGGSLTVQILASSSTKSCKDETSKNKEFHGLLSSSDEHSLTTSPIVITRVKNIADHLK* 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 12210665 12222452 - CsaV3_5G015040.1 Csa05g01180 529567

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01180 452 SUPERFAMILY Multidrug resistance efflux transporter EmrE 318 402 - -
Csa05g01180 452 Pfam EamA-like transporter family 116 241 IPR000620 GO:0016020|GO:0016021
Csa05g01180 452 Pfam EamA-like transporter family 251 399 IPR000620 GO:0016020|GO:0016021
Csa05g01180 452 PANTHER OS03G0707200 PROTEIN-RELATED 52 449 - -
Csa05g01180 452 SUPERFAMILY Multidrug resistance efflux transporter EmrE 174 245 - -
Csa05g01180 452 PANTHER - 52 449 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01180 - - - csv:101219169 896.73
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g438 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0756 Cone19ag0761 . . Lsi04g01195 . Chy10g00266 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01180 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010866 0 0 0 0 0 1 1 1 0 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 5 2 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g01180 Csa_Chr05 FPKM 253.325363 277.791412 225.591507 227.044357 95.96666 92.061279 91.75209 127.222267 126.005135 128.359055