Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01193 ATGGATCCCCCAACCTCCTACCGTAGTCGTCGAACCACCAACAAATCTGACCTCTACTCCACAGTGGTCATCCATTCCAATTCCGATTCCGACTCCGACAACAACCCCGACCATCGGAATCCTCACCGTCGACCAAGGCCACCGACCGAAGGACAAGACCTTTACGCCACAATGCTCTACAAGGATGTTGATAAGCCTCGGGATGAAGACGATGACGATGATTCTTCTCTCCCTCCTCTCCTCAAACGCCTTCCCAAGGATTTCGGCGGTGGAGCCCCAATTGGCTACGAGGATGACGATGCTTTTGATTTTGATCAGGATACTGAAGACTTCGGTACCATGATCGTCAAGACGGATAGGAATCGTCCTCGTAATCGCTCTGTGTCTTCCTCAGTTTCTACCAATCCTCGAACTTCGCCGTTACCGTTTGTGAACTTTCAGCAGGGGAGCCCCGGGAAGAGAGATGGTAGTGATGAAGTCGAGGATAGTGAGGAGGAAGATGATGGTGATGGATATTCTACGTTTGTGGTGAGGTCGACGGCGAGGTCGCGGAACAGAGAATCAGTTAGTGGGACTGTTGTTCGAAGGACTGGTGGTAGTCGCAGTGGTTCCAGAGATGGAGGCGGAGGACTTGATGGGTCCACGATGGGCAGGGCGGTGGCGAGTATGCAAGGTATGGGAGAGTTAGGGTTTGGGAAACAGAGGAAGGGGAATGGATCACCGATGAGTGAGGAGGACGGTGGTCGGATACGCAGTAAGGTATCGTCGAGTTCGATTCCAGAAAGCATCACCAGGGAAGATCCACATTCTAAGTATGAATTGCTCAATGAACTTGGAAAGGGGTCCTATGGGGCTGTATATAAAGCAAGAGATATTAAGACCTCTGAGCTGGTTGCTATCAAGGTCATTTCTTTGTGTGAAGGGGAGGAAGGATATGAAGAAATTCGTGGTGAAATTGAGATGTTGCAGCAATGCAGTCATCCAAATGTTGTCCGCTATCTTGGGAGCTATCAAGGAGAAGAGTATCTATGGATAGTAATGGAGTACTGTGGGGGTGGCAGTGTTGCTGACTTGATGAATGTTACCGAGGAAGCTTTAGAGGAATATCAGATTGCATATATCTGTAGGGAGGCACTGAAGGGTCTCACTTATCTTCATTCAATATTCAAAGTTCACAGAGATATCAAGGGTGGTAATATTTTGTTAACTGAGCAAGGGGATGTCAAGTTGGGTGATTTTGGAGTTGCAGCTCAGCTGACTAGGACCATGTCAAAGCGCAATACATTCATTGGCACTCCACATTGGATGGCTCCAGAAGTTATTCAGGAAAGTCGATATGATGGGAAGGTGGATGTGTGGGCCCTTGGTGTTTCTGCTATTGAAATGGCTGAGGGGCTTCCTCCAAGATCTGCAGTGCATCCAATGAGGGTTTTATTCATGATATCAATTGAGCCAGCTCCAATGCTTGAAGACAAAGAAAAATGGTCCTTGCTGTTCCATGACTTTGTTGCAAAGTGTCTGACAAAAGATCCTCGTTCACGCCCTGCTGCTTCTGAAATGTTGAAGCACAAATTCATTGAGAAATGCAGATGTGGGGCGTCGGCAATGTTGCCCAAGATTGAAAAAGCTAGGAAAATCAGGACTTTAATGGCTCAACAAGCACAAAGTATTGCTCCAGATGCATCAGGAGATGGTACAATAGTAGCTGCAAATTTGAATCAAGATTATGGAGATACTGTTCCTTCAAAGCCTCAGAATATTGGACTTCAGGTAGCAAGTGAAATAGCAGGCTCTGAACTTGTAGCAGAAGGTACTTTTGGCACTGTAATAGTCCATGATGGAGATGAGAATGATAAGGTGGCCTCTCAACTGGATATAGGCATTGCTGAACCACCAACTGGTTCCTTACGCAATGAGAGCCTATCCATTAACGTAACTAGAGTTGACTCTAGTGTGCGTACAGGAGGAATTGTAAATAATATTCTTGATGGAAAATCGGATCCCACCATGCCTGCATCTTTACCTTCATTTTTGGGTATTCATGAGCTTAGCACATTGAAGAGTGAAACTGTCAGCCGGAAATCATTTGCTCTGCAGGACAAGCTCTGGTCCATTTATGCAGCGGGTAATACTGTGCCCATTCCGTTCTTGAGGGCTACTGACATATCCCCCATTGCTTTGTTATCTGACAACGTCCTTGGAGGTGTGCAGCATGACAATAGGGGTACTGTAGCTGTGGAAACGCTTCAGGAACTTTTCACCGGTGATGGACAATCAAAAAAGGGTCGTAGGGGACAAAATGAGATGCCTCTTCCACCCAGTGTTTATCAAAGACTTACTTCAAGTCCAACACTATTGAACCTTGCCCAGGCTTTAGCTTACCACAGAATGTGTTACGAAGATATGCCACTTCAAGAGTTGCAGGCAACTCAAGAACAACAAACCATTCAAAATCTTTGTGATACTCTGAGAACTATCCTCCGATTGTAG 2490 46.31 MDPPTSYRSRRTTNKSDLYSTVVIHSNSDSDSDNNPDHRNPHRRPRPPTEGQDLYATMLYKDVDKPRDEDDDDDSSLPPLLKRLPKDFGGGAPIGYEDDDAFDFDQDTEDFGTMIVKTDRNRPRNRSVSSSVSTNPRTSPLPFVNFQQGSPGKRDGSDEVEDSEEEDDGDGYSTFVVRSTARSRNRESVSGTVVRRTGGSRSGSRDGGGGLDGSTMGRAVASMQGMGELGFGKQRKGNGSPMSEEDGGRIRSKVSSSSIPESITREDPHSKYELLNELGKGSYGAVYKARDIKTSELVAIKVISLCEGEEGYEEIRGEIEMLQQCSHPNVVRYLGSYQGEEYLWIVMEYCGGGSVADLMNVTEEALEEYQIAYICREALKGLTYLHSIFKVHRDIKGGNILLTEQGDVKLGDFGVAAQLTRTMSKRNTFIGTPHWMAPEVIQESRYDGKVDVWALGVSAIEMAEGLPPRSAVHPMRVLFMISIEPAPMLEDKEKWSLLFHDFVAKCLTKDPRSRPAASEMLKHKFIEKCRCGASAMLPKIEKARKIRTLMAQQAQSIAPDASGDGTIVAANLNQDYGDTVPSKPQNIGLQVASEIAGSELVAEGTFGTVIVHDGDENDKVASQLDIGIAEPPTGSLRNESLSINVTRVDSSVRTGGIVNNILDGKSDPTMPASLPSFLGIHELSTLKSETVSRKSFALQDKLWSIYAAGNTVPIPFLRATDISPIALLSDNVLGGVQHDNRGTVAVETLQELFTGDGQSKKGRRGQNEMPLPPSVYQRLTSSPTLLNLAQALAYHRMCYEDMPLQELQATQEQQTIQNLCDTLRTILRL* 830
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 12373260 12403661 + CsaV3_5G015170.1 Csa05g01193 529580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01193 829 PANTHER SERINE/THREONINE-PROTEIN KINASE TAO 214 819 - -
Csa05g01193 829 PANTHER SERINE/THREONINE-PROTEIN KINASE TAO 214 819 - -
Csa05g01193 829 MobiDBLite consensus disorder prediction 31 49 - -
Csa05g01193 829 MobiDBLite consensus disorder prediction 1 30 - -
Csa05g01193 829 ProSiteProfiles Protein kinase domain profile. 272 526 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g01193 829 MobiDBLite consensus disorder prediction 125 152 - -
Csa05g01193 829 Pfam Protein kinase domain 272 526 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g01193 829 SUPERFAMILY Protein kinase-like (PK-like) 269 527 IPR011009 -
Csa05g01193 829 MobiDBLite consensus disorder prediction 110 124 - -
Csa05g01193 829 MobiDBLite consensus disorder prediction 229 268 - -
Csa05g01193 829 SMART serkin_6 272 526 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g01193 829 MobiDBLite consensus disorder prediction 176 199 - -
Csa05g01193 829 Gene3D Transferase(Phosphotransferase) domain 1 268 561 - -
Csa05g01193 829 MobiDBLite consensus disorder prediction 1 217 - -
Csa05g01193 829 CDD STKc_MAP4K3_like 271 526 - -
Csa05g01193 829 ProSitePatterns Protein kinases ATP-binding region signature. 278 301 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02327 Csa-Chr4:23725942 Csa05g01193 Csa-Chr5:12373260 8.70E-83 dispersed
Csa05g01193 Csa-Chr5:12373260 Csa05g01916 Csa-Chr5:22320443 2.53E-62 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78241 PF00069 Pkinase 7.50E-68 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01193 - - csv:101209775 1464.51