Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01193 ATGGATCCCCCAACCTCCTACCGTAGTCGTCGAACCACCAACAAATCTGACCTCTACTCCACAGTGGTCATCCATTCCAATTCCGATTCCGACTCCGACAACAACCCCGACCATCGGAATCCTCACCGTCGACCAAGGCCACCGACCGAAGGACAAGACCTTTACGCCACAATGCTCTACAAGGATGTTGATAAGCCTCGGGATGAAGACGATGACGATGATTCTTCTCTCCCTCCTCTCCTCAAACGCCTTCCCAAGGATTTCGGCGGTGGAGCCCCAATTGGCTACGAGGATGACGATGCTTTTGATTTTGATCAGGATACTGAAGACTTCGGTACCATGATCGTCAAGACGGATAGGAATCGTCCTCGTAATCGCTCTGTGTCTTCCTCAGTTTCTACCAATCCTCGAACTTCGCCGTTACCGTTTGTGAACTTTCAGCAGGGGAGCCCCGGGAAGAGAGATGGTAGTGATGAAGTCGAGGATAGTGAGGAGGAAGATGATGGTGATGGATATTCTACGTTTGTGGTGAGGTCGACGGCGAGGTCGCGGAACAGAGAATCAGTTAGTGGGACTGTTGTTCGAAGGACTGGTGGTAGTCGCAGTGGTTCCAGAGATGGAGGCGGAGGACTTGATGGGTCCACGATGGGCAGGGCGGTGGCGAGTATGCAAGGTATGGGAGAGTTAGGGTTTGGGAAACAGAGGAAGGGGAATGGATCACCGATGAGTGAGGAGGACGGTGGTCGGATACGCAGTAAGGTATCGTCGAGTTCGATTCCAGAAAGCATCACCAGGGAAGATCCACATTCTAAGTATGAATTGCTCAATGAACTTGGAAAGGGGTCCTATGGGGCTGTATATAAAGCAAGAGATATTAAGACCTCTGAGCTGGTTGCTATCAAGGTCATTTCTTTGTGTGAAGGGGAGGAAGGATATGAAGAAATTCGTGGTGAAATTGAGATGTTGCAGCAATGCAGTCATCCAAATGTTGTCCGCTATCTTGGGAGCTATCAAGGAGAAGAGTATCTATGGATAGTAATGGAGTACTGTGGGGGTGGCAGTGTTGCTGACTTGATGAATGTTACCGAGGAAGCTTTAGAGGAATATCAGATTGCATATATCTGTAGGGAGGCACTGAAGGGTCTCACTTATCTTCATTCAATATTCAAAGTTCACAGAGATATCAAGGGTGGTAATATTTTGTTAACTGAGCAAGGGGATGTCAAGTTGGGTGATTTTGGAGTTGCAGCTCAGCTGACTAGGACCATGTCAAAGCGCAATACATTCATTGGCACTCCACATTGGATGGCTCCAGAAGTTATTCAGGAAAGTCGATATGATGGGAAGGTGGATGTGTGGGCCCTTGGTGTTTCTGCTATTGAAATGGCTGAGGGGCTTCCTCCAAGATCTGCAGTGCATCCAATGAGGGTTTTATTCATGATATCAATTGAGCCAGCTCCAATGCTTGAAGACAAAGAAAAATGGTCCTTGCTGTTCCATGACTTTGTTGCAAAGTGTCTGACAAAAGATCCTCGTTCACGCCCTGCTGCTTCTGAAATGTTGAAGCACAAATTCATTGAGAAATGCAGATGTGGGGCGTCGGCAATGTTGCCCAAGATTGAAAAAGCTAGGAAAATCAGGACTTTAATGGCTCAACAAGCACAAAGTATTGCTCCAGATGCATCAGGAGATGGTACAATAGTAGCTGCAAATTTGAATCAAGATTATGGAGATACTGTTCCTTCAAAGCCTCAGAATATTGGACTTCAGGTAGCAAGTGAAATAGCAGGCTCTGAACTTGTAGCAGAAGGTACTTTTGGCACTGTAATAGTCCATGATGGAGATGAGAATGATAAGGTGGCCTCTCAACTGGATATAGGCATTGCTGAACCACCAACTGGTTCCTTACGCAATGAGAGCCTATCCATTAACGTAACTAGAGTTGACTCTAGTGTGCGTACAGGAGGAATTGTAAATAATATTCTTGATGGAAAATCGGATCCCACCATGCCTGCATCTTTACCTTCATTTTTGGGTATTCATGAGCTTAGCACATTGAAGAGTGAAACTGTCAGCCGGAAATCATTTGCTCTGCAGGACAAGCTCTGGTCCATTTATGCAGCGGGTAATACTGTGCCCATTCCGTTCTTGAGGGCTACTGACATATCCCCCATTGCTTTGTTATCTGACAACGTCCTTGGAGGTGTGCAGCATGACAATAGGGGTACTGTAGCTGTGGAAACGCTTCAGGAACTTTTCACCGGTGATGGACAATCAAAAAAGGGTCGTAGGGGACAAAATGAGATGCCTCTTCCACCCAGTGTTTATCAAAGACTTACTTCAAGTCCAACACTATTGAACCTTGCCCAGGCTTTAGCTTACCACAGAATGTGTTACGAAGATATGCCACTTCAAGAGTTGCAGGCAACTCAAGAACAACAAACCATTCAAAATCTTTGTGATACTCTGAGAACTATCCTCCGATTGTAG 2490 46.31 MDPPTSYRSRRTTNKSDLYSTVVIHSNSDSDSDNNPDHRNPHRRPRPPTEGQDLYATMLYKDVDKPRDEDDDDDSSLPPLLKRLPKDFGGGAPIGYEDDDAFDFDQDTEDFGTMIVKTDRNRPRNRSVSSSVSTNPRTSPLPFVNFQQGSPGKRDGSDEVEDSEEEDDGDGYSTFVVRSTARSRNRESVSGTVVRRTGGSRSGSRDGGGGLDGSTMGRAVASMQGMGELGFGKQRKGNGSPMSEEDGGRIRSKVSSSSIPESITREDPHSKYELLNELGKGSYGAVYKARDIKTSELVAIKVISLCEGEEGYEEIRGEIEMLQQCSHPNVVRYLGSYQGEEYLWIVMEYCGGGSVADLMNVTEEALEEYQIAYICREALKGLTYLHSIFKVHRDIKGGNILLTEQGDVKLGDFGVAAQLTRTMSKRNTFIGTPHWMAPEVIQESRYDGKVDVWALGVSAIEMAEGLPPRSAVHPMRVLFMISIEPAPMLEDKEKWSLLFHDFVAKCLTKDPRSRPAASEMLKHKFIEKCRCGASAMLPKIEKARKIRTLMAQQAQSIAPDASGDGTIVAANLNQDYGDTVPSKPQNIGLQVASEIAGSELVAEGTFGTVIVHDGDENDKVASQLDIGIAEPPTGSLRNESLSINVTRVDSSVRTGGIVNNILDGKSDPTMPASLPSFLGIHELSTLKSETVSRKSFALQDKLWSIYAAGNTVPIPFLRATDISPIALLSDNVLGGVQHDNRGTVAVETLQELFTGDGQSKKGRRGQNEMPLPPSVYQRLTSSPTLLNLAQALAYHRMCYEDMPLQELQATQEQQTIQNLCDTLRTILRL* 830
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 12373260 12403661 + CsaV3_5G015170.1 Csa05g01193 529580

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01193 829 PANTHER SERINE/THREONINE-PROTEIN KINASE TAO 214 819 - -
Csa05g01193 829 PANTHER SERINE/THREONINE-PROTEIN KINASE TAO 214 819 - -
Csa05g01193 829 MobiDBLite consensus disorder prediction 31 49 - -
Csa05g01193 829 MobiDBLite consensus disorder prediction 1 30 - -
Csa05g01193 829 ProSiteProfiles Protein kinase domain profile. 272 526 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g01193 829 MobiDBLite consensus disorder prediction 125 152 - -
Csa05g01193 829 Pfam Protein kinase domain 272 526 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g01193 829 SUPERFAMILY Protein kinase-like (PK-like) 269 527 IPR011009 -
Csa05g01193 829 MobiDBLite consensus disorder prediction 110 124 - -
Csa05g01193 829 MobiDBLite consensus disorder prediction 229 268 - -
Csa05g01193 829 SMART serkin_6 272 526 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g01193 829 MobiDBLite consensus disorder prediction 176 199 - -
Csa05g01193 829 Gene3D Transferase(Phosphotransferase) domain 1 268 561 - -
Csa05g01193 829 MobiDBLite consensus disorder prediction 1 217 - -
Csa05g01193 829 CDD STKc_MAP4K3_like 271 526 - -
Csa05g01193 829 ProSitePatterns Protein kinases ATP-binding region signature. 278 301 IPR017441 GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01193 - - - csv:101209775 1464.51
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02327 Csa-Chr4:23725942 Csa05g01193 Csa-Chr5:12373260 8.70E-83 dispersed
Csa05g01193 Csa-Chr5:12373260 Csa05g01916 Csa-Chr5:22320443 2.53E-62 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa04g02327 . 1 696 MAP Kinase Kinase Kinase Kinase AT1G53165 62.8 5.8e-223 770.8
Csa05g01193 . 270 530 MAP Kinase Kinase Kinase Kinase AT1G53165 53.1 3.1e-67 253.4
Csa04g02327 . 1 692 MAP Kinase Kinase Kinase Kinase AT3G15220 64.4 1.0e-230 796.6
Csa05g01193 . 270 530 MAP Kinase Kinase Kinase Kinase AT3G15220 51.5 1.4e-67 254.6
Csa05g01193 . 4 830 MAP Kinase Kinase Kinase Kinase AT1G69220 59.0 2.1e-240 828.9
Csa04g02327 . 23 268 MAP Kinase Kinase Kinase Kinase AT1G69220 51.4 6.3e-67 252.7
Csa05g01916 . 1 668 MAP Kinase Kinase Kinase Kinase AT5G14720 66.8 5.7e-255 877.1
Csa03g00090 . 7 719 MAP Kinase Kinase Kinase Kinase AT4G24100 64.3 3.0e-246 848.2
Csa03g00090 . 11 720 MAP Kinase Kinase Kinase Kinase AT4G10730 64.8 3.8e-246 847.8
Csa03g02963 . 4 367 MAP Kinase Kinase Kinase Kinase AT1G70430 61.7 2.1e-131 466.5
Csa03g00090 . 3 369 MAP Kinase Kinase Kinase Kinase AT1G70430 56.8 1.5e-118 423.7
Csa03g02963 . 1 680 MAP Kinase Kinase Kinase Kinase AT1G79640 58.7 6.2e-214 740.7
Csa05g01916 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 58.6 1.6e-102 370.2
Csa03g02963 . 6 324 MAP Kinase Kinase Kinase Kinase AT1G23700 52.2 7.3e-87 318.2
Csa03g00090 . 17 306 MAP Kinase Kinase Kinase Kinase AT1G23700 50.9 8.3e-75 278.1
Csa03g01242 . 32 497 MAP Kinase Kinase Kinase Kinase AT4G14480 57.1 2.6e-140 495.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003387 1 1 1 1 1 2 1 2 3 0 3 2 1 1 1 1 3 2 1 3 1 3 1 1 1 2 1 1 4 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78241 PF00069 Pkinase 7.50E-68 CL0016 Csa PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g01193 Csa_Chr05 FPKM 33.247952 35.086086 34.752331 36.264084 201.284866 163.893158 166.397415 32.195366 32.577499 31.970526