Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01194 ATGTTCAAGGAAAATACTACTATGATGATGGACTCTAATCCACCACTATTCGATCAATACGAGTTCCTTTTGCAATCCACAGCTCATTTACAACCATTTAACAATGGAAATCTACCAACTAACTCTGTCATGGAGGAATGTCAGCTTCCTCTTATTGATCTTAAAGGTTTGAAAAGTAGCGATGAAAAGGAGAGGGTAGCTTGTAGAAGAGAGATTTTTGAAGCATCAGAAGAATGGGGATTCTTCCAAGTGATAAACCATGGGATACACACAGAGCTACTGAACAGAATGAACAAAGAACAAATAAAGTTGTTTGGGGTACCCTTTGAGAAAAAATTTACAAGTGGGATTTTGGATAATTCTTACAGATGGGGAACACCCACTGCAACCCACCCAAACCAGTTCTCTTGGTCTGAAGCTTTTCACATTCCCCTCACAAAGGTCTCTGAAGCTGCCTGCTATGGCGACTTCATTTACTTAAGGGAAGTGATGGAGGAAGTGGCAAGCGCGATGTCGAAGGTAGCAAGAAAATTGGCAGGAGTTTTAGTGGAGAGTATGGGGCAGAGGAAGGAATTATTAGAGGATATTTGCGACGAAAGCACATGCTTCCTCCGGTTGAATCACTACCCAATTTGTCCATTTTCCGGCGAAGTTTCAGGGCTGGTGCCACACACGGACAGCGATTTTCTTACAATACTTCATCAAGATTCCGGCGGTGGTCTTCAGGTGATGAAAGGATCGCAATGGTTAGCTGTGAAACCCAATCCACAAGCCCTTGTTGTCAACATTGGAGACCTTCTTCAGGCCTGGAGCAATGATACGTACAAGAGTGCAAAGCATAGGGTCGTGGCTAACCCGATGAGGGAAAGATATTCGATAGCATACTTCCTCTGCCCTTCTTATCACTCTCAAATTGGGAGTTGCAGAGAGCCTTCACCTTATAGACACTTCACGTTTGCTGAGTACAGAAAACAAGTCAGAGATGATGTGGAAAAAACTGGCTACAAAATAGGACTTTCAAATTTTCGGCTTTAA 1035 43.0 MFKENTTMMMDSNPPLFDQYEFLLQSTAHLQPFNNGNLPTNSVMEECQLPLIDLKGLKSSDEKERVACRREIFEASEEWGFFQVINHGIHTELLNRMNKEQIKLFGVPFEKKFTSGILDNSYRWGTPTATHPNQFSWSEAFHIPLTKVSEAACYGDFIYLREVMEEVASAMSKVARKLAGVLVESMGQRKELLEDICDESTCFLRLNHYPICPFSGEVSGLVPHTDSDFLTILHQDSGGGLQVMKGSQWLAVKPNPQALVVNIGDLLQAWSNDTYKSAKHRVVANPMRERYSIAYFLCPSYHSQIGSCREPSPYRHFTFAEYRKQVRDDVEKTGYKIGLSNFRL* 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 12419415 12423841 + CsaV3_5G015180.1 Csa05g01194 529581

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01194 344 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 198 299 IPR005123 -
Csa05g01194 344 SUPERFAMILY Clavaminate synthase-like 35 326 - -
Csa05g01194 344 PANTHER OS02G0630300 PROTEIN 38 336 - -
Csa05g01194 344 Pfam 2OG-Fe(II) oxygenase superfamily 203 299 IPR044861 -
Csa05g01194 344 Gene3D - 47 337 IPR027443 -
Csa05g01194 344 Pfam non-haem dioxygenase in morphine synthesis N-terminal 49 143 IPR026992 -
Csa05g01194 344 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 38 336 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01194 - - K04125 cmax:111486865 595.89
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01106 Csa-Chr1:6856248 Csa05g01194 Csa-Chr5:12419415 2.03E-116 dispersed
Csa03g00549 Csa-Chr3:4624619 Csa05g01194 Csa-Chr5:12419415 9.24E-99 dispersed
Csa05g01194 Csa-Chr5:12419415 Csa04g00857 Csa-Chr4:6069374 3.22E-46 dispersed
Csa05g01194 Csa-Chr5:12419415 Csa03g01444 Csa-Chr3:10796440 3.12E-42 transposed
Csa05g01194 Csa-Chr5:12419415 Csa05g00556 Csa-Chr5:3603527 4.52E-42 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1070 . . . . . . . . Cmo04g01062 . Cma04g00986 . Car04g00924 . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo11g01001 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01194 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012990 0 1 0 0 0 1 2 1 1 0 1 1 1 1 1 2 1 2 2 1 1 1 1 0 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g01194 Csa_Chr05 FPKM 20.943787 23.885065 34.771568 33.808445 19.549454 17.296717 21.436218 23.130125 21.154951 25.886995