Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01197 ATGGGGGCGTTTATCAAACTCGAGGATTCTCCTATGTTCTTGAAACAGATATCTTCTCTACAACGAACAACGGATGTGTTAGAAGATCGATGTAGAAGACTACACAGTGGATGTAGGATGTTTATGGAAACTCTTGGTGAAGCTAGTAATGGAGACATTTCTTTTGCAGATTCTTTGGAAGGTTTCGGTGGTGGGCAAGATGATCCTGTCAGCGTGTCTATTGGAGGTCCAGTTTTATCCAAGTTTGTCACTGCATTTCGTGAACTTGCTACATACAAAGAACAACTGCGTTCTCAGGTAGAACATGTATTAACAAATCGGTTGATGCAGTTCCTGGACGAGGATTTACAAGGAGTAAAGGACTCTCGTCAACGCTTCGATAAAGCTATGCATGAGTATGACCAGGCTCGAGAAAAATTTGTCTCATTGAAAAAGAACACACGAGGGGACATTGTTGCAGAATGTGAAGAGGACCTCCTGAATTCAAAGTCAGCATTTGAGAAAAGTCGCTTCAATCTAGTGAATGCGCTTATGAACGTTGAAGCAAAGAAGAAGTATGAGTTCTTAGAATCTATAAGTGCACTGATGGATGCTCATTTGAGATATTTTAAGCTAGGCTTTGACTTATTTGGTCAGATGGAACCGTTCATTCATCAGGTTCTAACATATGCACAACAATCTAAAGAACTGGCCAACATTGAACAAGATAAACTTGCAAAAAGGATTCAGGAATTCAGGACACAAGCACAGCTGGACAATTTGCAAGCTTCCAATAGCCTAGATACTTCTGTGGTTTCTGATGGCATTCATGGTAGTGGTATCAACTCCTACAGAAGTGTTGAAACAGCTCCTCAGTCCATTGTCAATGGGAAGGTCGAAACAATAAAACAAGGGTATCTCTTGAAAAGATCTTCAGGTTCGAGGGGAGACTGGAAAAGGATGTTTTTTGTACTTGATAGTCAAGGTGCTCTCTATTATTATAAGAACAAGGCAAGCAGATATGTGGGCCAACAATCTCATAGTTTCAATCGCTCAGATGAACACAACAACAGTATGTTTGGTAGATTCCGTGCAAGGCACAATAGGTCATCATCACTCAATGAAGAAATTTTGCGTTGTTCTACAGTTAACCTGCATACGTCTACGATAAAGATGGATGCAGAGGATTCAGATCTACGACTTTGCTTCAGAATAATTTCTCCCTCTAAGACCTTCACTTTGCAGGCCGAAAATGAGGCAGATAGGATGGACTGGATCAATAAAATCACGGGGGCTATTGCATCTCTTTTCAATTCTTATTTTCTTCAACAGCCATTCCTGGAAGCAAAACATCCAGAGTGTGACAAAAACAATTTCAACGATTATAGTGTTCAGACACGACATGAAAAAAGATTAGAAGATGGCAGCCAAGTAGATTCTGTTTCTAAGATACTAAGAGAAATCCCTGGAAATGATCTATGTGCAGAGTGCGGCAGTTCAGAACCTGAATGGGCATCTCTGAACCTTGGCATTTTATTGTGCATAGAATGCTCTGGTGTTCACCGTAATCTTGGTGTCCATATTTCAAAGGTGAGATCAATTATATTGGATGTCAAAGTCTGGGAGCCTTCAATACTGGACTTATTTAGGAACTTAGGCAATACTTATTGTAACTCTATTTGGGAGGGATTGTTTCTTGCAGATACTGGAAGGGATAATACACAACATGCCTTAGCGACGTCAATTCCAAAACCAAGCCCCAAGGATGCCAATCAGCTTAGGGAGAGATACATTCAGGCTAAGTATGTAGAGAAACAGTTTGTAGTTAAGGATAGTGAAGCGCCGGGCAACATTTCTTATGCAAAAAGTATCTGGGAAGCTGTCAAAACAAATGACTTGCGAGAAGCATACCGTCTCATTGCAGTTTCAGCTGTATCGATTGTCAACACGACTTATGATAATGTAGTCAGTGTCAGTTCAAGCCCACATTTGGATGAGGAACCCTCAGGAAATCAAGAATCACTGAATCCATCATCATGCACGAGAGATTGGGATTCTAATGAGTCAAGTGATAGTCTTCAAGGTTGCTCACTATTGCATCTTGCTTGTCAAAATGACAATCAAGTGATGCTTGAACTACTACTACAATTTGGTACCGATATAAATGTGTGTGACTCTCATGGAAGGACGCCTTTGCATCAATGCATCTCCCAGAAAAACAACAAGTTGGCTAAGTTGCTACTAAGAAGAGGTGCAAAACCATCAATCAAAGATTGTGGAGGATTAAGTGCCTTAGAAAGAGCAATGGAAATGGGAGCAATAACCGATGAGGAGCTATTTCTTTTGCTTACAGGATCTGAATAA 2343 40.55 MGAFIKLEDSPMFLKQISSLQRTTDVLEDRCRRLHSGCRMFMETLGEASNGDISFADSLEGFGGGQDDPVSVSIGGPVLSKFVTAFRELATYKEQLRSQVEHVLTNRLMQFLDEDLQGVKDSRQRFDKAMHEYDQAREKFVSLKKNTRGDIVAECEEDLLNSKSAFEKSRFNLVNALMNVEAKKKYEFLESISALMDAHLRYFKLGFDLFGQMEPFIHQVLTYAQQSKELANIEQDKLAKRIQEFRTQAQLDNLQASNSLDTSVVSDGIHGSGINSYRSVETAPQSIVNGKVETIKQGYLLKRSSGSRGDWKRMFFVLDSQGALYYYKNKASRYVGQQSHSFNRSDEHNNSMFGRFRARHNRSSSLNEEILRCSTVNLHTSTIKMDAEDSDLRLCFRIISPSKTFTLQAENEADRMDWINKITGAIASLFNSYFLQQPFLEAKHPECDKNNFNDYSVQTRHEKRLEDGSQVDSVSKILREIPGNDLCAECGSSEPEWASLNLGILLCIECSGVHRNLGVHISKVRSIILDVKVWEPSILDLFRNLGNTYCNSIWEGLFLADTGRDNTQHALATSIPKPSPKDANQLRERYIQAKYVEKQFVVKDSEAPGNISYAKSIWEAVKTNDLREAYRLIAVSAVSIVNTTYDNVVSVSSSPHLDEEPSGNQESLNPSSCTRDWDSNESSDSLQGCSLLHLACQNDNQVMLELLLQFGTDINVCDSHGRTPLHQCISQKNNKLAKLLLRRGAKPSIKDCGGLSALERAMEMGAITDEELFLLLTGSE* 781
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 12434134 12479444 + CsaV3_5G015210.1 Csa05g01197 529584

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01197 780 SMART ANK_2a 720 749 IPR002110 GO:0005515
Csa05g01197 780 SMART ANK_2a 687 716 IPR002110 GO:0005515
Csa05g01197 780 Pfam PH domain 295 426 IPR001849 -
Csa05g01197 780 ProSiteProfiles Ankyrin repeat profile. 720 752 IPR002110 GO:0005515
Csa05g01197 780 CDD ArfGap 476 595 - -
Csa05g01197 780 SMART 5bar 6 219 IPR004148 GO:0005515|GO:0005737
Csa05g01197 780 ProSiteProfiles Ankyrin repeat region circular profile. 687 718 - -
Csa05g01197 780 PANTHER CENTAURIN/ARF 1 776 IPR045258 GO:0005096
Csa05g01197 780 CDD BAR_SFC_plant 15 216 IPR035670 -
Csa05g01197 780 PRINTS HIV Rev interacting protein signature 484 503 IPR001164 GO:0005096
Csa05g01197 780 PRINTS HIV Rev interacting protein signature 503 520 IPR001164 GO:0005096
Csa05g01197 780 PRINTS HIV Rev interacting protein signature 526 547 IPR001164 GO:0005096
Csa05g01197 780 Gene3D - 286 436 IPR011993 -
Csa05g01197 780 Gene3D Arfaptin homology (AH) domain/BAR domain 6 251 IPR027267 -
Csa05g01197 780 CDD PH_ACAP 296 431 - -
Csa05g01197 780 Pfam BAR domain of APPL family 7 229 - -
Csa05g01197 780 Pfam Ankyrin repeats (3 copies) 680 751 IPR002110 GO:0005515
Csa05g01197 780 Gene3D Arf GTPase activating protein 451 608 IPR038508 -
Csa05g01197 780 MobiDBLite consensus disorder prediction 651 679 - -
Csa05g01197 780 SUPERFAMILY Ankyrin repeat 685 767 IPR036770 -
Csa05g01197 780 SUPERFAMILY PH domain-like 287 440 - -
Csa05g01197 780 ProSiteProfiles PH domain profile. 293 427 IPR001849 -
Csa05g01197 780 ProSiteProfiles Ankyrin repeat region circular profile. 720 751 - -
Csa05g01197 780 Pfam Putative GTPase activating protein for Arf 474 602 IPR001164 GO:0005096
Csa05g01197 780 SUPERFAMILY ArfGap/RecO-like zinc finger 473 602 IPR037278 -
Csa05g01197 780 Coils Coil 119 146 - -
Csa05g01197 780 ProSiteProfiles Ankyrin repeat profile. 687 719 IPR002110 GO:0005515
Csa05g01197 780 Gene3D - 671 777 IPR036770 -
Csa05g01197 780 ProSiteProfiles ARF GTPase-activating proteins domain profile. 472 608 IPR001164 GO:0005096
Csa05g01197 780 SMART arf_gap_3 472 608 IPR001164 GO:0005096
Csa05g01197 780 SMART PH_update 294 429 IPR001849 -
Csa05g01197 780 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD2 1 776 - -
Csa05g01197 780 SUPERFAMILY BAR/IMD domain-like 7 316 IPR027267 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01197 K12489 ACAP; Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein - csv:101221303 1545.41
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00226 Csa-Chr4:1357655 Csa05g01197 Csa-Chr5:12434134 0 dispersed
Csa05g01197 Csa-Chr5:12434134 Csa05g01664 Csa-Chr5:19769497 3.34E-19 dispersed
Csa05g01197 Csa-Chr5:12434134 Csa01g02626 Csa-Chr1:23243264 4.35E-19 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1058 . . . . . . . . Cmo04g01063 . . . Car04g00926 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01197 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003009 1 11 0 0 1 2 2 2 3 0 1 1 2 1 1 2 2 2 3 3 1 1 1 2 2 1 0 2 0 1 51
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g01197 Csa_Chr05 FPKM 26.948736 30.603989 13.050687 13.614902 7.546537 6.60855 7.869761 12.974461 11.562786 13.051781