Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01208 ATGGCAATGCCATCGGGAAATGTTGGTGTACCGGATAAAGTTTCGTTTCAGAGTGGTGGTGGAGTTGCAGTGAGTGGTGGTGGTGGCGAGATCCATCAGCACCATCCCCGCCCTTGGTTTCCCGATGAGCGTGATGGGTTTATCTCATGGTTGCGCGGGGAATTTGCTGCCTCGAATGCGATAATTGATGCGCTTTGCCATCATTTACGTGCTGTAGGAGAGCCTGGGGAATATGATATGGTTATTGGATGTATACAGCAACGGCGATGTAATTGGACACCGGTGCTTCATATGCAGCAGTACTTTTCAGTTGCAGAAGTGATGTATGCCCTTCAGCAGGTAACCTCAAGGAGGCAGCAGAGGTATATGGACCCTGTGAAAGTGGGGCCGAAGTTGTATAGAAGACCTGGGCCAGGGTTTAAGCAGCAGCAGGGCCATCGGGCTGAAGCCACAGTCAAGGAAGAGACAATCACTTGTGCAGAGTCATGTAATGGTGGGAACTCTTCAACTTTTGTAAGCTCTAGGAAGGTGGAGCAAGTAAGTAATACGTGTGATGAAAGTAAGGCATCAGGGGAGGATGAAAAATTGAGCGAAAAAGATTCAGGGTCAGCTGTGGACAATAAAGATACTCATGGGAAGGACCAAAGTAATTGCAAAACGAAGTCTGCAGAAAATCTAGAAGACAATGCAATTAATAAAGACTCTCAAGTTGAACCTGATGATGGATGCTCTTCAAGCCATAGAGATAAGGAGCTGCAGTCTGTTCAAAGCCAGAATGGAAAGCAGTATGCTGCCACAACCCCGAGAACCTTTGTTGCCAGTGAGATGTTTGATGGAAAGATGGTGAATGTGATGGATGGATTGAAATTATTTGAAGAATTATTGGATGATGCTGAGGTTTCAAAGCTTCTTTCGCTGGTTAATGATTTGAGGGCTTCCGGAAAGAGAGGGCAATTTCAAGGTCAGACGTATGTGGTCTCAAAAAGACCCATGAAGGGACATGGGAGAGAAATGATCCAACTAGGCTTTCCCATTGCAGATGCTCCTCATGAGGATGACAATTCTTTAGGGCTTTCTAAAGATAGAAGAATAGAACCCATTCCCTCATTGCTTCAAGATCTCATTGATCGCTTGGTTGGGGATCAAGTGATGACAGTGAAACCAGATTCCTGCATCATCGATTTTTATAACGAGGGTGATCATTCTCAGCCTCATGTCTGGCCATCATGGTTTGGAAGGCCTGTTGGTGTCCTCCTTCTGACTGAATGTGAAATAACCTTTGGTAGAGTGATTGGTACCGATCATTCTGGAAACTATAGAGGGGCTATGAAGTTGTCTCTCACACCTGGAAACCTTCTTGTGGTGCAAGGAAAATCTGCAGATTTTGCTAAGCATGCACTTCCTGCCATCCGCAAGCAACGCATACTTGTTACATTAACCAAATCACAACCAAAAAGAGCTGCACCAGCTGACGGGCAACGCACATCTCTAAATGTAGGTACATTTTCTGGTTGGGGCCCTCCATCTGCTAGATCACCCAACCCTCGTCTTTCACCTGGACAGAAGCCCTACCCTACGGTTCCATCAACTGGTGTACTACCGGTACCACCCATTCGTCCCCAAATGGCACCACCAAATGGCATCCCTCCTTTAATTGTTCCTCCTGTAGCATCACCTATGCCTTTCACTCCTGTGCCGATCCCAACTGGTCCATCAGCATGGCCCACTGCACATACAAGGCATCCTCCACCTCGTTTACCTGTCCCAGGCACTGGAGTATTCCTTCCCCCTCCAGGCTCTTCTAGTGCTCCAACTCCATCTCCTCAACAGCAGTTGCCAATCTCCAATATTGAGACGGGTTCCCTTTCAGAAAAGGAGAATGGTTTGACGAAATCTGATCACAGTTCAGGTACTTTTCCAGGAGAAAAACCAGATGCGAAGGCTCAAAGACAAGAATGCAATGGGAGTATAGATGGAAGTGGGAATGATAAAGTGAAAGAGGAAGAGCAGCAGCAGCAACAGGAGGAGGAACAAAGTGCCCAAAATGCAGTTTAG 2055 46.81 MAMPSGNVGVPDKVSFQSGGGVAVSGGGGEIHQHHPRPWFPDERDGFISWLRGEFAASNAIIDALCHHLRAVGEPGEYDMVIGCIQQRRCNWTPVLHMQQYFSVAEVMYALQQVTSRRQQRYMDPVKVGPKLYRRPGPGFKQQQGHRAEATVKEETITCAESCNGGNSSTFVSSRKVEQVSNTCDESKASGEDEKLSEKDSGSAVDNKDTHGKDQSNCKTKSAENLEDNAINKDSQVEPDDGCSSSHRDKELQSVQSQNGKQYAATTPRTFVASEMFDGKMVNVMDGLKLFEELLDDAEVSKLLSLVNDLRASGKRGQFQGQTYVVSKRPMKGHGREMIQLGFPIADAPHEDDNSLGLSKDRRIEPIPSLLQDLIDRLVGDQVMTVKPDSCIIDFYNEGDHSQPHVWPSWFGRPVGVLLLTECEITFGRVIGTDHSGNYRGAMKLSLTPGNLLVVQGKSADFAKHALPAIRKQRILVTLTKSQPKRAAPADGQRTSLNVGTFSGWGPPSARSPNPRLSPGQKPYPTVPSTGVLPVPPIRPQMAPPNGIPPLIVPPVASPMPFTPVPIPTGPSAWPTAHTRHPPPRLPVPGTGVFLPPPGSSSAPTPSPQQQLPISNIETGSLSEKENGLTKSDHSSGTFPGEKPDAKAQRQECNGSIDGSGNDKVKEEEQQQQQEEEQSAQNAV* 685
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 12581188 12593170 + CsaV3_5G015320.1 Csa05g01208 529595

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01208 684 SUPERFAMILY Clavaminate synthase-like 277 479 - -
Csa05g01208 684 MobiDBLite consensus disorder prediction 605 637 - -
Csa05g01208 684 MobiDBLite consensus disorder prediction 484 528 - -
Csa05g01208 684 MobiDBLite consensus disorder prediction 571 604 - -
Csa05g01208 684 MobiDBLite consensus disorder prediction 494 508 - -
Csa05g01208 684 MobiDBLite consensus disorder prediction 169 186 - -
Csa05g01208 684 MobiDBLite consensus disorder prediction 187 248 - -
Csa05g01208 684 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN-RELATED 1 670 IPR044842 GO:0003729|GO:0006402|GO:0032451
Csa05g01208 684 MobiDBLite consensus disorder prediction 169 263 - -
Csa05g01208 684 Coils Coil 662 684 - -
Csa05g01208 684 MobiDBLite consensus disorder prediction 571 684 - -
Csa05g01208 684 MobiDBLite consensus disorder prediction 128 148 - -
Csa05g01208 684 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN 1 670 - -
Csa05g01208 684 Gene3D - 272 488 IPR037151 -
Csa05g01208 684 MobiDBLite consensus disorder prediction 249 263 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01208 - - - csv:101210274 1344.72
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa05g02539 Csa05g01208 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g01208 Csa-Chr5:12581188 Csa07g01764 Csa-Chr7:18015694 1.07E-46 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1008 . . . . . Bpe10g00916 . Bma15g00107 . Cmo18g01101 . Cma18g01078 . Car18g01001 . Cpe09g00245 . Bhi07g01436 Tan04g0948 . Lac13g0415 Hepe10g1829 . . Cla05g02368 . . . . . . . . . . Lsi04g00330 Csa05g02539 Chy10g01081 Cme10g00329 Blo06g00943 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01208 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005898 1 2 2 1 1 1 2 1 1 0 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g01208 Csa_Chr05 FPKM 0.151408 0.0 18.083479 14.989504 26.139914 27.540625 26.060516 3.486501 3.494861 3.36755