Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Csa05g01220 | ATGGCAATTTTACCCACCAGCACTTCAAGATTGGACCTCTCCATCTCTGTACCAGGCTTCAATTCATTTTCATCAGCACTCCCTCCATCTGTAGGGAGAGATTTGGACATGAACAAAGCTCCAGATGAAGAGGAATGGATGATGGGAACTATGGAAGAAGATGAAGAAATTAATAACAATGGAAGCAATAATCCAAGGAAGAAACTACGTTTAACAAAGGAACAATCACATCTTCTTGAACAAAGCTTTAGACAAAACCATACCTTAAACCCAAAACAGAAGGAGACTTTGGCAGAAGTGTTGAAGTTGAAACCAAGGCAGATTGAAGTTTGGTTTCAGAATCGAAGGGCCAGATGGTATGAAATGATTAGGAGCAAGTTAAAACAAACGGAGATGGAATGTGAGTATCTAAAGAGATGGTTCGGGCTATTAACAGAACAAAACAAGAGACTACAAAAGGAGGTGGAGGAGCTAAGAGCAATGAAGGTGGCGCCCCCGACGGTGATTTCACCGCACAGCTCCGAGCCGCTGCCGGCGTCGAATCTCACAATGTGCCCACGCTGTGAGCGCGTGACAACCACCACCCTCGACAAGACCCGGATCGTCGTTTAA | 612 | 44.93 | MAILPTSTSRLDLSISVPGFNSFSSALPPSVGRDLDMNKAPDEEEWMMGTMEEDEEINNNGSNNPRKKLRLTKEQSHLLEQSFRQNHTLNPKQKETLAEVLKLKPRQIEVWFQNRRARWYEMIRSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEELRAMKVAPPTVISPHSSEPLPASNLTMCPRCERVTTTTLDKTRIVV* | 204 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 12811044 | 12817222 | + | CsaV3_5G015440.1 | Csa05g01220 | 529607 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Csa05g01220 | 203 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-17 | 1 | 198 | - | - | |
| Csa05g01220 | 203 | Pfam | Homeobox associated leucine zipper | 128 | 162 | IPR003106 | GO:0006355|GO:0043565 | |
| Csa05g01220 | 203 | CDD | homeodomain | 65 | 119 | IPR001356 | GO:0003677 | |
| Csa05g01220 | 203 | SMART | halz | 128 | 171 | IPR003106 | GO:0006355|GO:0043565 | |
| Csa05g01220 | 203 | PANTHER | - | 1 | 198 | - | - | |
| Csa05g01220 | 203 | SMART | HOX_1 | 64 | 126 | IPR001356 | GO:0003677 | |
| Csa05g01220 | 203 | ProSiteProfiles | 'Homeobox' domain profile. | 62 | 122 | IPR001356 | GO:0003677 | |
| Csa05g01220 | 203 | Pfam | Homeodomain | 66 | 119 | IPR001356 | GO:0003677 | |
| Csa05g01220 | 203 | Gene3D | - | 58 | 129 | - | - | |
| Csa05g01220 | 203 | Coils | Coil | 141 | 161 | - | - | |
| Csa05g01220 | 203 | SUPERFAMILY | Homeodomain-like | 47 | 119 | IPR009057 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Csa05g01220 | Csa-Chr5:12811044 | Csa05g02044 | Csa-Chr5:23758676 | 8.69E-74 | dispersed | |
| Csa05g01220 | Csa-Chr5:12811044 | Csa06g03058 | Csa-Chr6:26295272 | 4.60E-47 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 31732 | PF00046 | Homeodomain | 3.60E-16 | CL0123 | Csa | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Csa05g01220 | K09338 | - | csv:101222713 | 390.963 |