Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01220 ATGGCAATTTTACCCACCAGCACTTCAAGATTGGACCTCTCCATCTCTGTACCAGGCTTCAATTCATTTTCATCAGCACTCCCTCCATCTGTAGGGAGAGATTTGGACATGAACAAAGCTCCAGATGAAGAGGAATGGATGATGGGAACTATGGAAGAAGATGAAGAAATTAATAACAATGGAAGCAATAATCCAAGGAAGAAACTACGTTTAACAAAGGAACAATCACATCTTCTTGAACAAAGCTTTAGACAAAACCATACCTTAAACCCAAAACAGAAGGAGACTTTGGCAGAAGTGTTGAAGTTGAAACCAAGGCAGATTGAAGTTTGGTTTCAGAATCGAAGGGCCAGATGGTATGAAATGATTAGGAGCAAGTTAAAACAAACGGAGATGGAATGTGAGTATCTAAAGAGATGGTTCGGGCTATTAACAGAACAAAACAAGAGACTACAAAAGGAGGTGGAGGAGCTAAGAGCAATGAAGGTGGCGCCCCCGACGGTGATTTCACCGCACAGCTCCGAGCCGCTGCCGGCGTCGAATCTCACAATGTGCCCACGCTGTGAGCGCGTGACAACCACCACCCTCGACAAGACCCGGATCGTCGTTTAA 612 44.93 MAILPTSTSRLDLSISVPGFNSFSSALPPSVGRDLDMNKAPDEEEWMMGTMEEDEEINNNGSNNPRKKLRLTKEQSHLLEQSFRQNHTLNPKQKETLAEVLKLKPRQIEVWFQNRRARWYEMIRSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEELRAMKVAPPTVISPHSSEPLPASNLTMCPRCERVTTTTLDKTRIVV* 204
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 12811044 12817222 + CsaV3_5G015440.1 Csa05g01220 529607
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01220 203 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-17 1 198 - -
Csa05g01220 203 Pfam Homeobox associated leucine zipper 128 162 IPR003106 GO:0006355|GO:0043565
Csa05g01220 203 CDD homeodomain 65 119 IPR001356 GO:0003677
Csa05g01220 203 SMART halz 128 171 IPR003106 GO:0006355|GO:0043565
Csa05g01220 203 PANTHER - 1 198 - -
Csa05g01220 203 SMART HOX_1 64 126 IPR001356 GO:0003677
Csa05g01220 203 ProSiteProfiles 'Homeobox' domain profile. 62 122 IPR001356 GO:0003677
Csa05g01220 203 Pfam Homeodomain 66 119 IPR001356 GO:0003677
Csa05g01220 203 Gene3D - 58 129 - -
Csa05g01220 203 Coils Coil 141 161 - -
Csa05g01220 203 SUPERFAMILY Homeodomain-like 47 119 IPR009057 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g01220 Csa-Chr5:12811044 Csa05g02044 Csa-Chr5:23758676 8.69E-74 dispersed
Csa05g01220 Csa-Chr5:12811044 Csa06g03058 Csa-Chr6:26295272 4.60E-47 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31732 PF00046 Homeodomain 3.60E-16 CL0123 Csa TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01220 K09338 - csv:101222713 390.963