Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01247 ATGTCCTTTTCAGCTGCTTCAAATCTTCCCTCAGGAGGACCCCATTCAGGGCTCTCTTCTGATGCATTGTATAGGGAATTATGGCATGCCTGTGCAGGCCCACTTGTCACCCTTCCTCGTCAAGATGAACGAGTGTACTACTTTCCCCAGGGTCACATGGAACAGCTGGAAGCCTCAATGCATCAAGGATTGGAGCAACAAATGCCTTCATTCAACCTTCCATCAAAAATACTTTGCAAAGTTGTCAATGTGGTTCTTCGGGCGGAATCCGACACCGATGAAGTTTATGCTCAGATAACTCTTTTACCAGAAAGCAATCAAAATGAAGTAACGAGCCCAGATCCTCCCCTTCCTGAGCCTACAAGATGTAATGTCCACTCTTTTTGCAAGACGCTCACCGCTTCTGACACCAGCACTCATGGTGGTTTCTCTGTTCTTAGGAGGCATGCGGATGACTGTCTACCACCTCTGGATATGTCTCAGCAGCCACCATGGCAAGAATTGGTTGCTACTGATTTACATGGGAATCAATGGCATTTTAGGCACATTTTCCGAGGTCAACCGAGGCGTCATTTGCTAACAACTGGGTGGAGTGTCTTTGTTAGTTCCAAAAAGCTAGTAGCTGGAGATGCTTTTATCTTTTTAAGAGGTGAAAATGGAGAGCTGCGTGTTGGCGTGAGAAGACTCATGAGACAGCTAAACAATATGCCATCTTCTGTTATATCAAGTCACAGTATGCATCTTGGAGTTTTAGCCACTGCTTCTCATGCTATTTCAACTGGAACACTTTTTTCTGTCTTTTACAAGCCAAGAACAAGCAGGTCTACATTTCTTGTAAGTCTGAACAAGTACCTTGAAGCTCAAAACCATAAACTCTCTGTTGGGATGAGGTTCAAGATGAGGTTTGAGGGCGAGGAAGTGCCTGAAAGAAGTTTTAGCGGAACAATTGTCGGTCTTGGAGATAATGCATCACCTGGGTGGGCGAATTCTGAGTGGCGATCTTTAAAGGTGCAATGGGATGAACCTTCATCTATCTTGCGTCCAGATAAGGTGTCTGCTTGGGAGTTGGAGCCGCTTGTTGCTTCTAACCCTCTAAGCACTCAGCCTACACAGAGGAACAAGCGTCCACGGCCAACTGTTTTGCCTTCATCTTCACCAGATGCAACTGTACTTGGTGGGTGGAAACCTACAGTTGAATCTTCTACTTTTTCATATGCTGAGCCACAGCGCGGAAGGGATCTATATTCATCACCAAAGTTCAGTACTGCTGCTTCAAATTCTCTTGGTTTTAATGCAAATAGTTCTCTTGGTGCTGTGTCCAGCAACAACTACTGGTGTAATACCAATAGGGTGGAAAATATTATGGACCCTTCATCTCATGGAGCAAACAGGGAGCCTGTTGAAAAGAAACAGAACAGTAGAAATGGATGCAGGCTCTTTGGGATCCAGCTTCTTGGAAATTCTAATGTAGATGAAGCATCTCCAGTTTCAACACCTAAAATGGGTGGTGAGGATAGGCTGGTTCCACCTATAGACACCGATTTTGAGCAGCATTCTGAACCATCAAACATACACCGATCAGATATACCCTCCATAAGCTGTGATGCTGACAAATCATGCTTGATTTCCCCATTAGAGTCTCAAAGTAGACAAATCCGCAGTTGCACAAAGGTTCACATGCAAGGAATTGCTGTTGGGAGGGCTGTAGATTTAACCCGGTTCAATCAATATGATGATCTACTTAGAAAACTGGAGGAGATGTTTGACATAGAGGGCGAGCTTTGTGGCTCTCTAAAGAAATGGCAGGTTGTTTACACCGATGATGAAGATGATATGATGTTGGTTGGAGATGATCCTTGGAATGAGTTCTGCAGCATGGTAAGGAAGATATTCATTTACACAACAGAAGAAGTGAAGAGACTTTCGCCAAAAATAAAACTCCCACTGGGTGGTGAGGCAAAGCTTAGCAAGCCAGATTCCGATATAATTGCCAATCACACGGAGGACCAATCGTCCATCGTGGGATCAGACTGCTGA 2037 44.62 MSFSAASNLPSGGPHSGLSSDALYRELWHACAGPLVTLPRQDERVYYFPQGHMEQLEASMHQGLEQQMPSFNLPSKILCKVVNVVLRAESDTDEVYAQITLLPESNQNEVTSPDPPLPEPTRCNVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHGNQWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMRQLNNMPSSVISSHSMHLGVLATASHAISTGTLFSVFYKPRTSRSTFLVSLNKYLEAQNHKLSVGMRFKMRFEGEEVPERSFSGTIVGLGDNASPGWANSEWRSLKVQWDEPSSILRPDKVSAWELEPLVASNPLSTQPTQRNKRPRPTVLPSSSPDATVLGGWKPTVESSTFSYAEPQRGRDLYSSPKFSTAASNSLGFNANSSLGAVSSNNYWCNTNRVENIMDPSSHGANREPVEKKQNSRNGCRLFGIQLLGNSNVDEASPVSTPKMGGEDRLVPPIDTDFEQHSEPSNIHRSDIPSISCDADKSCLISPLESQSRQIRSCTKVHMQGIAVGRAVDLTRFNQYDDLLRKLEEMFDIEGELCGSLKKWQVVYTDDEDDMMLVGDDPWNEFCSMVRKIFIYTTEEVKRLSPKIKLPLGGEAKLSKPDSDIIANHTEDQSSIVGSDC* 679
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 13139550 13148870 - CsaV3_5G015710.1 Csa05g01247 529634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01247 678 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 9 654 IPR044835 GO:0003677|GO:0006355|GO:0009725
Csa05g01247 678 MobiDBLite consensus disorder prediction 362 386 - -
Csa05g01247 678 Gene3D - 291 364 - -
Csa05g01247 678 SUPERFAMILY CAD & PB1 domains 555 630 - -
Csa05g01247 678 CDD B3_DNA 126 228 IPR003340 GO:0003677
Csa05g01247 678 Gene3D - 548 642 - -
Csa05g01247 678 MobiDBLite consensus disorder prediction 362 393 - -
Csa05g01247 678 ProSiteProfiles PB1 domain profile. 553 646 IPR000270 GO:0005515
Csa05g01247 678 Gene3D - 125 230 IPR015300 -
Csa05g01247 678 Pfam AUX/IAA family 600 643 IPR033389 -
Csa05g01247 678 Pfam AUX/IAA family 554 589 IPR033389 -
Csa05g01247 678 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677
Csa05g01247 678 MobiDBLite consensus disorder prediction 656 678 - -
Csa05g01247 678 SMART B3_2 128 230 IPR003340 GO:0003677
Csa05g01247 678 Pfam Auxin response factor 254 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Csa05g01247 678 Pfam B3 DNA binding domain 128 228 IPR003340 GO:0003677
Csa05g01247 678 PANTHER AUXIN RESPONSE FACTOR 9 9 654 - -
Csa05g01247 678 SUPERFAMILY DNA-binding pseudobarrel domain 117 257 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00009 Csa-Chr1:68012 Csa05g01247 Csa-Chr5:13139550 6.14E-41 dispersed
Csa05g01247 Csa-Chr5:13139550 Csa07g01449 Csa-Chr7:14775256 0 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31733 PF02362 B3 7.80E-20 CL0405 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01247 K14486 - csv:101204612 1370.14