Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01254 ATGCTCGTTCCTACTGCCTTCAACGCCCTCAAATCCTCAAGGTCAATATCTTGGTCGCCGACGGGCAGGCTTCAGCAAACCTTGGCGGGATGTCTGGAGCTGAGTGGGATATCTCTGCATTCTGGGAAAGTTGCGAAAGTGAAGTTGTGTCCCGAGTTTGCTGGCAGAGGAAGGTATTTTGATTTCAAATCCAACTTCATTCCTGCATCGATCGATTATGCCGAAGACTCGCCTCTTTGCACCACGCTTTCTAAGGATGGGTTTAAAATTCGAACAGTTGAGCATTTGCTTTCTGCCATGGAGGCCATGGGGGTCGACAATTGTAGGATCGTGATAACGAATGAAGATGCCAAAGACAGCGAAGTCGAGGTTCCAATTTTTGATGGATCTGCGGGTAAATGGGTGGATGCGATAGAGGAGATTGGTCTTAAGTTGGCTATAGACCAGTGTGGCAACTTCTGTGAAAAAATGGCACCACATGTAAATCAGCCTGTCCATGTGTGGAGGAATGACTGTTTTCTTATTGCTTTTCCAGCCACAGAAGTTCGTATCACTTATGGAATCGACTTTCCTCAGGTGCCTGAAATTGGCTGCCAATGGTTTTTTACTGCCCCTTTGGACAACAAGTTCTATGCTGAGCAAATAGCCCCATCAAGAACCTTTTGCATTTATGAGGAGGTAGAGCAAATGCGTAATATGGGACTTATAAAAGGAGGCTCAATGGAAAATGCTTTAGTTTGCAGTGTCAGCAAAGGTTGGATCAATCCACCGTTGCGTTTCCATGATGAACCTTGTCGTCACAAGGTTTTAGATTTAATTGGCGATCTGTCGCTTTTTGCGCAGTTGGGCAGTCAAGGGATTCCGTTGGCACACTTAGTGGTTTACAAGGGTGGTCATGCTATGCACGCAAATTTTCTTCGCCGCTTATTGGAAAGGATTTAA 942 45.65 MLVPTAFNALKSSRSISWSPTGRLQQTLAGCLELSGISLHSGKVAKVKLCPEFAGRGRYFDFKSNFIPASIDYAEDSPLCTTLSKDGFKIRTVEHLLSAMEAMGVDNCRIVITNEDAKDSEVEVPIFDGSAGKWVDAIEEIGLKLAIDQCGNFCEKMAPHVNQPVHVWRNDCFLIAFPATEVRITYGIDFPQVPEIGCQWFFTAPLDNKFYAEQIAPSRTFCIYEEVEQMRNMGLIKGGSMENALVCSVSKGWINPPLRFHDEPCRHKVLDLIGDLSLFAQLGSQGIPLAHLVVYKGGHAMHANFLRRLLERI* 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 13344597 13362784 + CsaV3_5G015780.1 Csa05g01254 529641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01254 313 Pfam UDP-3-O-acyl N-acetylglycosamine deacetylase 25 310 IPR004463 GO:0008759|GO:0009245
Csa05g01254 313 TIGRFAM lpxC: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 25 311 IPR004463 GO:0008759|GO:0009245
Csa05g01254 313 SUPERFAMILY Ribosomal protein S5 domain 2-like 163 311 IPR020568 -
Csa05g01254 313 SUPERFAMILY Ribosomal protein S5 domain 2-like 24 143 IPR020568 -
Csa05g01254 313 Gene3D lpxc deacetylase, domain 2 160 313 IPR011334 GO:0008759|GO:0009245
Csa05g01254 313 Gene3D lpxc deacetylase, domain 1 23 148 IPR015870 GO:0008759|GO:0009245
Csa05g01254 313 PANTHER UDP-3-O-ACYL-N-ACETYLGLUCOSAMINE DEACETYLASE 1, MITOCHONDRIAL-RELATED 1 311 IPR004463 GO:0008759|GO:0009245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01254 K02535 - csv:101205101 640.958