Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01255 ATGGCGGAGATTTCTGGTGATGGAGGTGGGTTTTTACCGGAGATTAGCAATGGGGTTGATTCTCAGGCTACGCCGACGCAGATTACAGCACCCAATCCAACGCCCTTGACGGTGTCCGGATCTTTTAAGGAAGGGAAAAGCTCCTCTCGTCGCCGGACGTCGGTCAGGCCGAGTATGGACGCCGACGACTTCTTGAACTTGTTGCACGGCTCGGATCCGGTGAAGGTGGAGCTCAATCGCCTCGAGAATGAAGTGCGAGATAAGGATAGAGAACTCGGGGAGGCTCAGGCAAAGATCAGGGCTTTGAAGTTGTCTGAGCGGCTTAGAGAAAAGGCAGTTGAAGAGCTGACTGACGAATTATCAAGGGTTGAGGAGAAACTAAAGTTGACAGAATCTCTTCTTGAAAGCAAGAATCTTGAAATTAAGAAAATCAATGATGAGAAAAAGGCTTCAATGGCAGCTCAATTTGCTGCTGAAGCCACTCTTAGGAGAGTACATGCTGCTCAAAAGGATGATGACATGCCACCAATCGAAGCCATTCTTGCACCTTTGGAGGCTGAGCTCAAGCTTGCAAGACAGGAGATTGCTAAGCTTCAAGATGACAATAAAGCATTGGATCGTCTCACCAAATCAAAGGAAGCAGCTTTGATTGATGCTGAGAGGACTGTTCAAAGTGCCCTGGCCAAGGCCTCTATGGTGGATGATTTACAGAATAAAAATCAGGAGTTAATGAAACAGATTGAGATTTGCCAGGAAGAAAATAAAATCTTGGATAAGATGCACAGACAGAAAGTTGCTGAGGTTGAAAAATTAACGCAAACTGTGAGGGAGCTAGAGGAGGCTGTTCTTGCTGGTGGTGCAGCAGCAAATGCTGTGAGGGATTATCAGCGAAAAGTTCAAGAGATGAATGAGGAAAGGAAAACTCTTGATAGAGAGTTGGCTCGTGCAAAAGTAACAGCCAACAGAGTGGCTGTTGTAGTAGCAAATGAATGGAAAGATGCTAATGATAAGGTTATGCCAGTTAAACAATGGCTTGAAGAACGAAGGTTCTTGCAGGGTGAAATGCAGCAACTTCGTGATAAACTTGCTATAACCGAGCGGACTGCAAAGTCTGAAGCACAATTGAAAGAGAAGTATCAACTGCGACTTAGAGTGCTTGAAGAGAGTTTGAGAGGGTCCTCTGGGGGTAACAATCGAAGTACTCCAGAAGGGAGAAGTATAAGCAATGGCCCTTCTCGTCGGCAATCCCTGGGTGGTGTTGACAACATTTCAAAATTAACTTCCAATGGATTTTTGTCCAAAAGGACACCAGGTTCTCAGTTTAGGTCTTTGTCCTCAAGCAGCAGCACTGTGTTGAAACATGCTAAAGGCACGTCAAAATCATTTGATGGAGGCACGAGGTCATTGGACCGAGGAAAGGTGTCATTAAATGGACTTCTACCCAGTTATTCATTCAATCAGTCCTGTGATGCAACAAAGGACAGTGAAGTAAATAATGATTGGAAAAGTAATCCTGATGAAAAAGGCAATGAGTCTCCAACGCTTGAGAGTGAAGACAGTGTTCCGGGCACATTGTATGATTTACTTCAAAAGGAGGTTATAGGTTTGAGAAAAGCTGGTCATGAGAAAGATCAAAGCCTTAAGGATAAGGATGATGCCATTGAGATGTTAGCAAAGAAGGTAGAGACGCTGACCAAAGCAATGGAGGTTGAGGCAAAGAAGATGAGAAGGGAAGTGGCTGCCATGGAGAAGGAGGTAGCAGCTATGCGTGTGGAGAAAGAGCAGGAGAACAGAGCAAAGCGATTTGGTGGTAGCACGAAAGGTCCCGTTAGTGCAGCACAACTGCTTCCTGGAAGAAATGTTGGACGAGGTGGGTTGAATCGCAGCACGCAATAA 1896 45.41 MAEISGDGGGFLPEISNGVDSQATPTQITAPNPTPLTVSGSFKEGKSSSRRRTSVRPSMDADDFLNLLHGSDPVKVELNRLENEVRDKDRELGEAQAKIRALKLSERLREKAVEELTDELSRVEEKLKLTESLLESKNLEIKKINDEKKASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALIDAERTVQSALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDRELARAKVTANRVAVVVANEWKDANDKVMPVKQWLEERRFLQGEMQQLRDKLAITERTAKSEAQLKEKYQLRLRVLEESLRGSSGGNNRSTPEGRSISNGPSRRQSLGGVDNISKLTSNGFLSKRTPGSQFRSLSSSSSTVLKHAKGTSKSFDGGTRSLDRGKVSLNGLLPSYSFNQSCDATKDSEVNNDWKSNPDEKGNESPTLESEDSVPGTLYDLLQKEVIGLRKAGHEKDQSLKDKDDAIEMLAKKVETLTKAMEVEAKKMRREVAAMEKEVAAMRVEKEQENRAKRFGGSTKGPVSAAQLLPGRNVGRGGLNRSTQ* 632
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 13370595 13376558 - CsaV3_5G015790.1 Csa05g01255 529642

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01255 631 Coils Coil 181 208 - -
Csa05g01255 631 Coils Coil 558 599 - -
Csa05g01255 631 MobiDBLite consensus disorder prediction 495 514 - -
Csa05g01255 631 MobiDBLite consensus disorder prediction 391 465 - -
Csa05g01255 631 Coils Coil 341 368 - -
Csa05g01255 631 PANTHER MICROTUBULE-ASSOCIATED PROTEIN 70-1 22 631 - -
Csa05g01255 631 MobiDBLite consensus disorder prediction 17 44 - -
Csa05g01255 631 MobiDBLite consensus disorder prediction 390 468 - -
Csa05g01255 631 MobiDBLite consensus disorder prediction 487 522 - -
Csa05g01255 631 PANTHER MICROTUBULE-ASSOCIATED PROTEIN 70-2 22 631 IPR009768 GO:0007010|GO:0008017
Csa05g01255 631 Coils Coil 292 319 - -
Csa05g01255 631 Pfam Microtubule-associated protein 70 62 614 IPR009768 GO:0007010|GO:0008017
Csa05g01255 631 Coils Coil 106 147 - -
Csa05g01255 631 Coils Coil 233 281 - -
Csa05g01255 631 Coils Coil 78 98 - -
Csa05g01255 631 MobiDBLite consensus disorder prediction 595 631 - -
Csa05g01255 631 MobiDBLite consensus disorder prediction 1 66 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01255 - - - csv:101212718 1132.09
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01933 Csa-Chr4:19175627 Csa05g01255 Csa-Chr5:13370595 0 dispersed
Csa05g01255 Csa-Chr5:13370595 Csa06g03443 Csa-Chr6:28359746 9.08E-154 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g500 . . . . . Bpe10g01001 Bma14g01927 Bma15g00026 Cmo04g01102 . Cma04g01029 Cma04g00077 Car04g00961 Car04g00073 Sed04g3001 . . Bhi07g00400 Tan04g1510 Cmetu10g0919 Lac13g1329 Hepe01g0590 . . Cla07g00538 Cam07g0579 Cec07g0638 Cco07g0604 Clacu07g0582 Cmu07g0618 Cre07g0954 . Cone19ag0733 Cone6ag0360 Cone9ag0390 Lsi04g01101 . . . Blo06g01031 . Bda07g01745 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01255 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000868 2 2 0 4 3 3 5 3 3 2 2 2 5 1 2 6 3 6 5 3 2 1 2 3 3 2 2 6 2 2 87
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g01255 Csa_Chr05 FPKM 21.630762 24.746721 14.489225 12.129392 11.260289 11.901114 13.534139 17.428761 16.767881 20.33102