Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01290 ATGGATGACGATGCGTTAAACATGCGTAATTGGGGTTATTATGAGCCGTCCTTCAAAGGGCATCTCGGCCTGCAGCTCATGTCCACCATTTCTGAGCGGGACATGAAACATTTCTTACCAGGCCGTGATCCTTCTGTTATGGTTAATGCCAATGGTTCCTTCCATCCTCGGGATTGCGTTGTTTCGGAAGCACCAGTGCATATGAACTATGTGAGGGACAATTGGGGGGGTAACAGAGATAGGTTTCTTAATATGTTACCTACCAATCACAGCTATCCTGTTATGCCAGAAACTTCAGGAGCTCACTCCTTGCAGATCTTGCAACCACCCTCTTCGTCGAGGGATGAAATAGCAGCAAGTAGAGTTGAAGAGCCTCCAGTGAAGAAGGAAGGTGGGAAAGCAAAGAAAAGACAGAGTAGTGAGGCTGGCCCCAAAGCCCCCAAAGCTAAAAAACCGAGGAAACCAAAAGATACTAGCACGGCTGTTCAGCGTGTGAAACCACCAAAGAAGAACATTGATCTTGTTATAAATGGGATTGATATGGACATCTCATGTATTCCAATCCCGGTTTGCTCTTGCACTGGAGCTCCTCATCAATGTTACAGGTGGGGATGTGGCGGTTGGCAATCTGCTTGTTGTACTACCAACATATCAACTTATCCTTTGCCCATGAGTGACAAAAGACGTGGGGCGAGGATAGCTGGGCGAAAAATGAGTCAGGGTGCGTTTAAGAAGGTACTTGAAAAACTAGCAGCTGATGGCTATAATTTTGCTAACCCAATCGATTTGAGGACTCACTGGGCGAGACATGGTACGAATAAGTTTGTCACAATCAGGTAG 840 46.31 MDDDALNMRNWGYYEPSFKGHLGLQLMSTISERDMKHFLPGRDPSVMVNANGSFHPRDCVVSEAPVHMNYVRDNWGGNRDRFLNMLPTNHSYPVMPETSGAHSLQILQPPSSSRDEIAASRVEEPPVKKEGGKAKKRQSSEAGPKAPKAKKPRKPKDTSTAVQRVKPPKKNIDLVINGIDMDISCIPIPVCSCTGAPHQCYRWGCGGWQSACCTTNISTYPLPMSDKRRGARIAGRKMSQGAFKKVLEKLAADGYNFANPIDLRTHWARHGTNKFVTIR* 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 13700427 13703021 - CsaV3_5G017130.1 Csa05g01290 529677

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01290 279 PANTHER PROTEIN BASIC PENTACYSTEINE2-LIKE 1 279 - -
Csa05g01290 279 Pfam GAGA binding protein-like family 1 279 IPR010409 -
Csa05g01290 279 MobiDBLite consensus disorder prediction 94 115 - -
Csa05g01290 279 PANTHER - 1 279 IPR010409 -
Csa05g01290 279 MobiDBLite consensus disorder prediction 117 160 - -
Csa05g01290 279 SMART GAGA_bind_2 1 279 IPR010409 -
Csa05g01290 279 MobiDBLite consensus disorder prediction 94 166 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01290 - - - csv:101208504 573.163
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g01290 Csa-Chr5:13700427 Csa07g00049 Csa-Chr7:550696 5.33E-44 dispersed
Csa05g01290 Csa-Chr5:13700427 Csa05g01291 Csa-Chr5:13703373 1.20E-141 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g554 . . . . . . . . . . . . . . . . Cpe01g01864 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo04g02245 Cmo15g00916 Cma04g02151 Cma15g00880 Car04g02085 Car15g00827 Cpe13g00435 . Bhi12g00980 . . . Hepe02g2589 . . Cla01g00663 Cam01g0694 Cec01g0686 Cco01g0714 Clacu01g0682 Cmu01g0657 Cre09g1849 Lsi09g00717 Csa05g01290 . Cme09g01290
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa05g01290 . 1 280 BBR/BPC Transcription factor family AT2G01930 55.3 6.6e-80 294.3
Csa05g01291 . 1 277 BBR/BPC Transcription factor family AT2G01930 51.7 2.6e-68 255.8
Csa05g01290 . 161 280 BBR/BPC Transcription factor family AT2G35550 60.0 1.1e-40 163.7
Csa05g01291 . 158 277 BBR/BPC Transcription factor family AT2G35550 58.3 1.8e-40 162.9
Csa02g02118 . 224 339 BBR/BPC Transcription factor family AT2G35550 59.5 1.7e-38 156.4
Csa07g00049 . 207 314 BBR/BPC Transcription factor family AT2G35550 59.3 4.2e-37 151.8
Csa02g02118 . 232 339 BBR/BPC Transcription factor family AT1G68120 57.4 3.9e-37 152.1
Csa07g00049 . 1 314 BBR/BPC Transcription factor family AT2G21240 62.7 3.3e-82 302.0
Csa02g02118 . 1 339 BBR/BPC Transcription factor family AT2G21240 51.6 2.2e-62 236.1
Csa07g00049 . 1 314 BBR/BPC Transcription factor family AT4G38910 59.6 1.8e-69 259.6
Csa02g02118 . 1 339 BBR/BPC Transcription factor family AT4G38910 50.1 3.2e-58 222.2
Csa02g02118 . 88 339 BBR/BPC Transcription factor family AT5G42520 61.7 4.6e-81 298.1
Csa05g01290 . 161 280 BBR/BPC Transcription factor family AT2G35550 60.0 1.1e-40 163.7
Csa05g01291 . 158 277 BBR/BPC Transcription factor family AT2G35550 58.3 1.8e-40 162.9
Csa02g02118 . 224 339 BBR/BPC Transcription factor family AT2G35550 59.5 1.7e-38 156.4
Csa07g00049 . 207 314 BBR/BPC Transcription factor family AT2G35550 59.3 4.2e-37 151.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002345 4 2 3 4 4 1 2 1 1 0 1 1 3 2 2 4 1 2 2 1 2 2 2 2 1 1 2 5 3 1 62
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31735 PF06217 GAGA_bind 4.30E-110 No_clan Csa TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g01290 Csa_Chr05 FPKM 13.492184 14.019543 23.888634 26.918232 2.612494 3.305487 3.066902 15.857885 0.0 14.312659