Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01292 ATGTTGAAACCTTCCTCTTCTTCTTCTTCCACACCCCTTCTTCCTCCTCCTCCTCCTCCTCCTCCCCCCAATTCCGACCAATATTCCATCACCACCAAACGAAAACGAAGACCCGCCGGCACTCCAGATCCGGATGCGGAAGTGGTTTCTTTATCACCCAAGACGCTACTTGAATCTGATCGGTACGTTTGTGAGATATGCAATCAAGGGTTTCAAAGAGATCAGAATCTCCAGATGCATCGACGGCGCCACAAGGTGCCGTGGAAGTTGGTGAAGAGGGCGGAGGCGGAGAGTAGTAGTAGTAATGTTGTTGTGAAGAAAAAGGTTTTTGTTTGTCCAGAGCCTACGTGTCTACATCATCACCCTTGCCATGCTCTTGGTGATCTAGTTGGGATTAAAAAACACTTCCGGAGAAAGCATAGTAACCAAAAACAGTGGGTTTGTGACAAATGCTCTAAGGCTTATGCTGTTCATTCTGATTTCAAAGCTCACCTCAAAACTTGTGGCACTCGTGGCCACTCTTGTGATTGTGGTCGTGTCTTTTCCAGAGTGGAGAGTTTCATAGAGCATCAAGACACTTGCAATCTGCGCCATATGAGGTCCGATCAGTTGCAGTCGGCGGTGGTACGGCCGCCACCACCACCACCACTGTTATTGCAACCCTATAACTCACGATCAGTATCTTACACTGGCGCCTCCACCAGCAACGATCATGCATTTCAAATGGCTAGTACTCCATTACGAGGGTTTCCAATTTTATCATCAAACTCAGATCGAAACATCAACATTAATTTACCCGATCGCCATGATCTTGAGCTCCATCTCTCTTCTCCAAGCTCAGCTTTTTTGAAGCTCTCAATTGGGTCGTCCAACAAGGAGCCAAACGATGACCGTCAACTCGAGCTGGCGATAGCGGAGAAGGCATATGCGGATGAAGCAAGACGAGAGGCAAAACGACAGATCGAAATTGCCGAGGTCGAGTTTGCAAATGCAAAAATGATAAGACAGCAAGCACAAGCGGAATTGGAGAAAGCAAGGATCTTGAAGGAAGAAGCTAGCCGGAAAATGAACTCCACCATTATGGAAATCACTTGCCAAACTTGCCGGTTGCATTTTCACGTCAGCTCCGCCATGCCCGAGGAGACCTCACTCGCCATCAGCTACATGTCGTCTGCTACAACAGAAGGTGATGGAGAGTGA 1200 47.92 MLKPSSSSSSTPLLPPPPPPPPPNSDQYSITTKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLVKRAEAESSSSNVVVKKKVFVCPEPTCLHHHPCHALGDLVGIKKHFRRKHSNQKQWVCDKCSKAYAVHSDFKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDTCNLRHMRSDQLQSAVVRPPPPPPLLLQPYNSRSVSYTGASTSNDHAFQMASTPLRGFPILSSNSDRNININLPDRHDLELHLSSPSSAFLKLSIGSSNKEPNDDRQLELAIAEKAYADEARREAKRQIEIAEVEFANAKMIRQQAQAELEKARILKEEASRKMNSTIMEITCQTCRLHFHVSSAMPEETSLAISYMSSATTEGDGE* 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 13726487 13728350 + CsaV3_5G017150.1 Csa05g01292 529679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01292 399 MobiDBLite consensus disorder prediction 10 26 - -
Csa05g01292 399 SMART c2h2final6 146 173 IPR013087 -
Csa05g01292 399 SMART c2h2final6 62 84 IPR013087 -
Csa05g01292 399 ProSiteProfiles Zinc finger C2H2 type domain profile. 62 84 IPR013087 -
Csa05g01292 399 PANTHER ZINC FINGER PROTEIN SHOOT GRAVITROPISM 5 27 282 - -
Csa05g01292 399 PANTHER ZINC FINGER PROTEIN SHOOT GRAVITROPISM 5 296 399 - -
Csa05g01292 399 PANTHER OS03G0310200 PROTEIN 27 282 IPR039288 GO:0009630
Csa05g01292 399 PANTHER OS03G0310200 PROTEIN 296 399 IPR039288 GO:0009630
Csa05g01292 399 SUPERFAMILY beta-beta-alpha zinc fingers 61 166 IPR036236 -
Csa05g01292 399 MobiDBLite consensus disorder prediction 1 49 - -
Csa05g01292 399 Coils Coil 314 355 - -
Csa05g01292 399 ProSitePatterns Zinc finger C2H2 type domain signature. 64 84 IPR013087 -
Csa05g01292 399 Gene3D Classic Zinc Finger 40 112 - -
Csa05g01292 399 Gene3D Classic Zinc Finger 131 208 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00055 Csa-Chr1:310653 Csa05g01292 Csa-Chr5:13726487 2.18E-17 dispersed
Csa01g00739 Csa-Chr1:4678750 Csa05g01292 Csa-Chr5:13726487 3.56E-132 dispersed
Csa05g01292 Csa-Chr5:13726487 Csa03g04077 Csa-Chr3:35706524 3.00E-71 dispersed
Csa05g01292 Csa-Chr5:13726487 Csa06g03225 Csa-Chr6:27277593 1.67E-72 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31737 None None None None Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01292 K25871 - csv:101210468 753.051