Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01293 ATGGAGTGTTGTCCAATTGGAAGCTTGAAAACAATCCATGTTCATGGATTGAGAATTGATGAGAATTCTTGCAACTCTTTGTTGCGGGTTGATCTTTCGGCAAATCGAATCATCGGTTCGATTCCGAGTTCCATTTCAAACTGCACGAATCTGCAGACACTTGGTTTGGCTGACAATTTACTCAGTGGGGAAATACCAAGATCTTTAGGGGAACTCAGTAGTTTACAAAGGGTTGATATATCTCATAATCAGCTCACTGGTTGGCTCCCTTCTGATTGGAGAAATGCTTGCAATTCACTTCAAGAACTAAAGCTTTGCTACAACAACATTTCTGGTGTAATTCCTGCTTCCTTCTCTGCTTGCTCTTGGCTTCAAATTATGGATCTTTCAAACAACAACATATCTGGTCCTTTACCAGATTCCATCTTCAAGAATCTTATCTCTTTACAGAGCTTGTTATTGAGTAATAACATAATCTCTGGACCATTGCCTTCATCCATATCTCACTGCAAGAAACTTCAGCTTGTAGACTTAAGTTCCAATAGAATTTCTGGGTTGGTTCCACCAGGTATATGCCCAGGTGCTGAGTCACTTCAAGAACTGAAAATGCCAGACAATCTCATAATAGGAGGAATCCCACCTGAACTCTCACTATGTTCACAGTTAAAGACAATTGATTTTAGTTTAAACTATCTGAATGGGTCAATTCCTGCAGAGCTTGGAAGGCTTCAGAATCTTGAACAGCTGATAGCATGGTTTAATAGCTTAGAAGGGAAAATCCCACCAGAATTGGGGAAGTGTAGAAGCTTGAAAGATGTTATACTAAATAACAATCGTTTAAGTGGGGAAATTCCCACTGAATTGTTCAATTGTAGCAACCTTGAATGGATTTCGCTCACAAGTAATGAACTCACTGGCGAGGTACCAAAAGAGTTTGGTCTTTTGTCAAGGTTGGCTGTGCTGCAACTCGGGAACAATAGCTTAAGTGGTCAGATACCAGGGGAGTTGGCAAACTGCAGCACTTTGGTTTGGTTGGATTTGAACAGCAACAAGCTCACAGGAGAAATTCCACCTAGACTTGGGAGGCAGCTTGGAGCCAAATCATTGAATGGGATTCTTTCTGGAAATACTCTAGTGTTCGTTCGAAATGTTGGGAATTCGTGTAAAGGAGTTGGGGGCTTGTTAGAGTTTGCTGGAATCAGACCTGAACGACTACAGCAGGAACCAACATTGAAGACCTGTGATTTCACTAGATTGTACTCCGGTCCAGTCCTCAGTTTGTTTACGAAGTACCAAACTTTGGAGTATTTGGATCTTTCTTACAATGAGCTTCGTGGGAGAATACCAGAAGAGTTTGGAGATATGGTTGCTTTGCAGGTTCTCGAATTATCACACAACCAACTTTCTGGCGAGATTCCAGAATCCTTTGGCCGCTTAAAGAACTTAGGAGTGTTTGATGCATCACATAATAGACTGCAGGGTCACATTCCAGATTCATTCTCAAACTTATCATTCTTAGTGCAAATTGATCTATCTTACAATGAACTAACCGGGAGAATTCCATCAAGGGGACAACTTAGTACACTGCCGGCAAGTCAGTATGCAAACAATCCAGGACTTTGTGGAGTTCCTTTGCCTGAATGCCCGAGTGATGACCAGCAGCAGACAAGTCCTAATGGAGATGCTAGCAAAGGAAGAACAAAGCCAGAAGTCGGGTCATGGGTTAACAGTATTGTTTTAGGTGTTCTTATCTCCATTGCCTGTGTCTGCATTTTGATTGTATGGGCCATTGCCATGCGTGCAAGACGAAAAGAAGCAGAGGAAGTGAAGATGCTTAATAGTTTACAAGCAATACATGCCCCTACTACATGGAAAATTGACAAAGAGAAAGAACCCCTGAGTATCAATGTGGCAACTTTCCAAAGACAACTAAGGAAGCTCAAGTTCTCCCAACTGATTGAAGCTACTAATGGCTTCTCAGCAGAAAGTCTCATAGGGAGTGGCGGGTTCGGTGAAGTATTTAAAGCAACACTAAAGGATGGATCAAGTGTTGCAATCAAGAAACTGATCCGTCTTAGTTGCCAGGGAGATCGTGAATTCATGGCGGAGATGGAAACTTTAGGAAAGATCAAACATGGAAACTTAGTACCTCTTTTGGGTTACTGTAAAATAGGTGAAGAGAGGCTTCTAGTGTATGAGTTTATGGAGTTTGGTAGCCTAGAAGAGATGCTTCATGGAAGAGCAAAGATGCAGGATCGAAGAATTCTAACATGGGATGAAAGGAAAAAGATTGCCAGAGGTGCTGCTAAAGGACTTTGTTTCCTACACCACAACTGCATTCCACACATAATACACAGAGACATGAAGTCCAGCAATGTACTCCTGGACCATGACTTAGAAGCAAGAGTTTCGGATTTTGGAATGGCAAGGCTGATAAGTGCTCTTGACACCCATCTGAGTGTAAGCACACTTGCAGGCACTCCTGGTTATGTCCCTCCTGAATACTACCAAAGCTTCAGATGCACAGCAAAAGGCGATGTTTATTCATTCGGGGTCGTCCTCTTAGAACTCTTGACAGGGAAACGACCAACCGATAAGGAGGATTTTGGGGACACCAACTTGGTGGGATGGGTCAAAATGAAAGTAAACGATGGAAAACAAATGGAAGTGATTGATCCAGAGTTGCTGTCAGTAACCAAAACAAGTGATGAATCAGAAGCAGAAGAGGTTAAAGAAATGGTTAGATATTTGGAGATAACTCTTCGGTGTGTAGAAGAGTTTCCTTCCAAAAGGCCTAACATGTTGCAGGTGGTGACAATGCTGCGAGAGTTGATGCCCGGATCAACCAATGGAAGCAGCAACAGTGCTTGA 2871 42.35 MECCPIGSLKTIHVHGLRIDENSCNSLLRVDLSANRIIGSIPSSISNCTNLQTLGLADNLLSGEIPRSLGELSSLQRVDISHNQLTGWLPSDWRNACNSLQELKLCYNNISGVIPASFSACSWLQIMDLSNNNISGPLPDSIFKNLISLQSLLLSNNIISGPLPSSISHCKKLQLVDLSSNRISGLVPPGICPGAESLQELKMPDNLIIGGIPPELSLCSQLKTIDFSLNYLNGSIPAELGRLQNLEQLIAWFNSLEGKIPPELGKCRSLKDVILNNNRLSGEIPTELFNCSNLEWISLTSNELTGEVPKEFGLLSRLAVLQLGNNSLSGQIPGELANCSTLVWLDLNSNKLTGEIPPRLGRQLGAKSLNGILSGNTLVFVRNVGNSCKGVGGLLEFAGIRPERLQQEPTLKTCDFTRLYSGPVLSLFTKYQTLEYLDLSYNELRGRIPEEFGDMVALQVLELSHNQLSGEIPESFGRLKNLGVFDASHNRLQGHIPDSFSNLSFLVQIDLSYNELTGRIPSRGQLSTLPASQYANNPGLCGVPLPECPSDDQQQTSPNGDASKGRTKPEVGSWVNSIVLGVLISIACVCILIVWAIAMRARRKEAEEVKMLNSLQAIHAPTTWKIDKEKEPLSINVATFQRQLRKLKFSQLIEATNGFSAESLIGSGGFGEVFKATLKDGSSVAIKKLIRLSCQGDREFMAEMETLGKIKHGNLVPLLGYCKIGEERLLVYEFMEFGSLEEMLHGRAKMQDRRILTWDERKKIARGAAKGLCFLHHNCIPHIIHRDMKSSNVLLDHDLEARVSDFGMARLISALDTHLSVSTLAGTPGYVPPEYYQSFRCTAKGDVYSFGVVLLELLTGKRPTDKEDFGDTNLVGWVKMKVNDGKQMEVIDPELLSVTKTSDESEAEEVKEMVRYLEITLRCVEEFPSKRPNMLQVVTMLRELMPGSTNGSSNSA* 957
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 13737132 13741182 - CsaV3_5G017160.1 Csa05g01293 529680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01293 956 Gene3D Transferase(Phosphotransferase) domain 1 735 954 - -
Csa05g01293 956 Pfam Brassinosteroid receptor island domain 370 428 IPR045381 -
Csa05g01293 956 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 25 945 - -
Csa05g01293 956 Gene3D Phosphorylase Kinase; domain 1 620 734 - -
Csa05g01293 956 SUPERFAMILY RNI-like 30 359 - -
Csa05g01293 956 ProSitePatterns Protein kinases ATP-binding region signature. 665 688 IPR017441 GO:0005524
Csa05g01293 956 Gene3D Ribonuclease Inhibitor 2 96 IPR032675 -
Csa05g01293 956 SMART LRR_typ_2 72 95 IPR003591 -
Csa05g01293 956 SMART LRR_typ_2 455 479 IPR003591 -
Csa05g01293 956 SMART LRR_typ_2 146 170 IPR003591 -
Csa05g01293 956 SMART LRR_typ_2 315 339 IPR003591 -
Csa05g01293 956 SMART LRR_typ_2 268 291 IPR003591 -
Csa05g01293 956 SMART LRR_typ_2 243 267 IPR003591 -
Csa05g01293 956 SMART serkin_6 659 945 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g01293 956 Gene3D - 372 428 - -
Csa05g01293 956 CDD STKc_IRAK 665 944 - -
Csa05g01293 956 Pfam Leucine rich repeat 27 85 IPR001611 GO:0005515
Csa05g01293 956 Pfam Leucine rich repeat 427 468 IPR001611 GO:0005515
Csa05g01293 956 SUPERFAMILY L domain-like 416 544 - -
Csa05g01293 956 MobiDBLite consensus disorder prediction 545 569 - -
Csa05g01293 956 ProSitePatterns Serine/Threonine protein kinases active-site signature. 783 795 IPR008271 GO:0004672|GO:0006468
Csa05g01293 956 SUPERFAMILY Protein kinase-like (PK-like) 640 941 IPR011009 -
Csa05g01293 956 Pfam Protein kinase domain 661 938 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g01293 956 Gene3D Ribonuclease Inhibitor 97 557 IPR032675 -
Csa05g01293 956 MobiDBLite consensus disorder prediction 549 563 - -
Csa05g01293 956 PANTHER LEUCINE-RICH RECEPTOR-LIKE KINASE FAMILY PROTEIN 25 945 - -
Csa05g01293 956 ProSiteProfiles Protein kinase domain profile. 659 945 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g01293 Csa-Chr5:13737132 Csa06g02833 Csa-Chr6:24710337 4.61E-07 dispersed
Csa05g01293 Csa-Chr5:13737132 Csa03g01130 Csa-Chr3:8912410 1.76E-06 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78242 PF00069 Pkinase 7.30E-44 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01293 - - csv:101208987 1860.88