Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g01302 ATGGCGGGAGTAGAATTGCTGGATATGTTTCCTCATCGGGACCTTGAAGAGGGAGCCACTGCCTCTTCTGATTGGAATCCAACTGATGCTGTGCTGTTTTTTGGACTGAGTTTGGTACTTGGAATTGCTTGCAGACACCTATTGCGAGGCACTAGAGTTCCTTATACAGTTGCCTTGCTTGTTCTTGGCATAGTTCTTGGATCTATTGAATATGGCACACATCATCAATTGGGAAAGATAGGGGATGGCATACGTCTCTGGGCAAAAATTGATCCTGATTTATTACTGGCTGTTTTCCTCCCTGCTTTGCTGTTCGAGAGTTCCTTTTCAATGGAAGTGCACCAAATAAAGAGGTGTCTGGCCCAAATGATCTTATTGGCTGGTCCAGGTGTTTTAATTTCAACCTTCTTGCTAGGATCTGCTTTCAAGCTCACTTTCCCGTATAATTGGAGTTGGAAAACATCATTGTTGCTCGGGGGACTTCTGAGTGCCACAGATCCTGTGGCTGTTGTGGCTCTATTGAAAGAGCTAGGAGCAAGTAAAAAACTGAATACAATAATAGAAGGAGAATCCTTGATGAATGATGGGACAGCAATTGTGGTTTATCAACTTTTTTATCAAATGGTCCTTGGAAAGAGCTTTAACTGGGGTGCTATAATCAAATATCTCACACAAGTCTCGCTGGGAGCTTTGGGAATTGGTCTTGCTTTTGGGATTGCATCTGTTTTATGGCTCGGGTTCATTTTCAACGACACAGTGATAGAGATTGCATTAACACTAGCTGTGAGCTATATTGCTTACTTCACTGCTCAAGAGGGAGCTGATGTTTCGGGTGTTCTGACAGTGATGAGTTTAGGAATGTTTTATGCTGCAGTTGCAAGAACAGCTTTTAAGGGTGACGGTCAACAAAGCTTGCATCATTTTTGGGAAATGGTTGCTTACATAGCGAATACATTAATTTTCATATTGAGTGGAGTTGTTATCGCTGAAGGTGTTCTTGGAAGCGAAGGAATTCTTGATAATGGAGCTTCATGGGGCTACCTCATTATACTTTATGTGTACGTGCAAGCTTCTCGATTTATGGTTGTTGGAGTATTATATCCATTTCTGCGGTATTTTGGGTATGGCTTGGATTGGAAAGAAGCTACAATACTAATATGGTCAGGTCTGCGTGGAGCTGTTGCTCTGTCACTTTCACTGTCAGTTAAGCGATCAAGTGACCAATCATTGTACATCAGTTCAGAAACTGGAACACTGTTTGTTTTTTTCACGGGTGGAATTGTATTCTTGACGCTGATTGTAAATGGTTCGACCACACAATTCATTTTACATCTTCTCAACATGGACAAGCTCTCAGTGGCTAAGAAACGCATATTGGATTATACAAAATACGAGATGATGAACAAAGCATTGGGCGCCTTTGGAGATCTTGGAGATGATGAGGAATTGGGACCTGCTGACTGGGCTACAGTTAAAAGACATATTACAAGTCTCAGTCATGTGGAGGGGGAGCCACTGCACCCGCACAATGCATTTGAAAGTGATCAAAATGTTCGATCTATGAATTTGAGAGACATTCGTCTGCGACTTTTGAATGGTGTTCAAGCTGCTTACTGGGGTATGCTTGATGAGGGAAGGATAACACAAAGTACTGCCAATATCTTGATGCAATCTGTGGATGAAGCCCTTGATCAGATTGCATATGAGCCCCTTTGTGATTGGAAGGGTTTAAAGTCTAATGTCCATTTTCCAAACTATTACAAGTTCCTTCAGACAAGCGTTTTCCCTCAGAAGTTGGTTACATATTTCACTGTGGAAAGATTAGAGTCCGGGTGTTACATTTGTGCTGCATTTCTCCGTGCACATCGAATTGCAAGACAGCAGCTTCATGAGTTTATAGGTGATAGTGATATTGCTTCTACTGTAATTAATGAAAGTGAAGCTGAGGGTGAAGAAGCACGAAAGTTTCTAGAAGATGTTCGTGAGACATTTCCTCAGGTTTTGCGTGTTGTCAAAACCAGACAAGTAACATATTCAGTGCTCAACCATTTAATTGAATATGTCCAAAATCTGGAGAAGGTTGGCCTGTTAGAAGAGAAAGAGATGTTGCATCTTCATGATGCTGTTCAGACCGACTTGAAAAGGCTTCTACGAAATCCTCCTTTGTTAAAGATTCCAAAAATGCGGAACTTAATCAGTGCCCATCCATTTCTTGGGGCACTTCCTCCTTTAGTGCGTGAACCACTTGAAGTTTCAACAAAAGAAGTGATGAAACTACGTGGTGTAACACTTTACAAGGAAGGTTCAAAGCCTAGTGGTGTTTGGCTTATATCCAACGGAGTGGTAAAGTGGATAAGTAAGAGCATGAGAAACAAGTTCTCCTTGCACCCCACATTTACTCATGGAAGCACTTTGGGCCTATATGAATTGCTTACTGGGAAGCCATGCTTCTGTGACATGATTACAGATTCCGTTGTTCTCTCTTTTTTTATTGAACATGACAAGTTTCTTTCAATACTTAGATCAGATCCTTCGGTTGAAGACTTCTTGTGGCAGGAAAGTTCCATTGTTCTTGCCAAACTTTTGCTTCCACAAGTATTTGAGAAAATGGAAATGAGAGATCTGAGAGTTCTTGTTGTTGAAAGGTCAGTAATGACTACGCATATAGCAGGAGAAACAATAGAAATTCCACCCCATTCTATTGGCCTTTTGTTGGAAGGATTTATCAAAAGTCATGGCATCCAAGAGGAACTTATAGCATCACCTGCTGTATTGTTCTCCTCGCACAGGAATCCGAGCTTCCAAAATATGGAAAACTCAGGGATGAGTGGTTCTAGTTTTTCTCATCAAGGCTCCCATTATGAAGTTGAAACAAGATCAAGAGTGATCGTTTTTGACATGGGTGCCCTTCAATCAGAAGAAAATCTAAATCGGTCGTCGTCTTTTATTCATTCTGTTGATCACCCTCAAAGATCTCTAAGCAGAGATCACTCAGGTCTTATGAGTTGGCCTGAAATGCTTTCTAAGCCTAGACCACCACAGAAGCAGAAATCTGAAAGAATTGAGCGTCCAGCTGATAGCTTGTCTGCAAAGGCCATGCAACTAAGCATATACGGTAGCATGGTTGATTTTCGTCAGCGGACTAAGAGTTTTCCGGGCAATATTGCGGAACCATCTCATAGCCGGTCGAATCCTGCAATTGGTTCACATAAAGGTGTTTCCCTTCCATACGTAAAATCAGAAGGAGCTGCTACATTGAAGAAGAGGCTTGATGCAAGAAAGTTACCAATAAGCAATGTTAGACCCCCACAACAAAAAGCACTTCCTAATGAGAGAAATGTAAGGGATGATTCAAGTGAGGAATCGGGTGGTGAGGACGATGTGATAGTGAGAATTGATTCACCAAGTGTGCTTTCGTTTCACCAGGTACCATGA 3435 41.69 MAGVELLDMFPHRDLEEGATASSDWNPTDAVLFFGLSLVLGIACRHLLRGTRVPYTVALLVLGIVLGSIEYGTHHQLGKIGDGIRLWAKIDPDLLLAVFLPALLFESSFSMEVHQIKRCLAQMILLAGPGVLISTFLLGSAFKLTFPYNWSWKTSLLLGGLLSATDPVAVVALLKELGASKKLNTIIEGESLMNDGTAIVVYQLFYQMVLGKSFNWGAIIKYLTQVSLGALGIGLAFGIASVLWLGFIFNDTVIEIALTLAVSYIAYFTAQEGADVSGVLTVMSLGMFYAAVARTAFKGDGQQSLHHFWEMVAYIANTLIFILSGVVIAEGVLGSEGILDNGASWGYLIILYVYVQASRFMVVGVLYPFLRYFGYGLDWKEATILIWSGLRGAVALSLSLSVKRSSDQSLYISSETGTLFVFFTGGIVFLTLIVNGSTTQFILHLLNMDKLSVAKKRILDYTKYEMMNKALGAFGDLGDDEELGPADWATVKRHITSLSHVEGEPLHPHNAFESDQNVRSMNLRDIRLRLLNGVQAAYWGMLDEGRITQSTANILMQSVDEALDQIAYEPLCDWKGLKSNVHFPNYYKFLQTSVFPQKLVTYFTVERLESGCYICAAFLRAHRIARQQLHEFIGDSDIASTVINESEAEGEEARKFLEDVRETFPQVLRVVKTRQVTYSVLNHLIEYVQNLEKVGLLEEKEMLHLHDAVQTDLKRLLRNPPLLKIPKMRNLISAHPFLGALPPLVREPLEVSTKEVMKLRGVTLYKEGSKPSGVWLISNGVVKWISKSMRNKFSLHPTFTHGSTLGLYELLTGKPCFCDMITDSVVLSFFIEHDKFLSILRSDPSVEDFLWQESSIVLAKLLLPQVFEKMEMRDLRVLVVERSVMTTHIAGETIEIPPHSIGLLLEGFIKSHGIQEELIASPAVLFSSHRNPSFQNMENSGMSGSSFSHQGSHYEVETRSRVIVFDMGALQSEENLNRSSSFIHSVDHPQRSLSRDHSGLMSWPEMLSKPRPPQKQKSERIERPADSLSAKAMQLSIYGSMVDFRQRTKSFPGNIAEPSHSRSNPAIGSHKGVSLPYVKSEGAATLKKRLDARKLPISNVRPPQQKALPNERNVRDDSSEESGGEDDVIVRIDSPSVLSFHQVP* 1145
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 13822662 13845207 + CsaV3_5G017250.1 Csa05g01302 529689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g01302 1144 CDD CAP_ED 737 846 IPR000595 -
Csa05g01302 1144 SUPERFAMILY cAMP-binding domain-like 723 851 IPR018490 -
Csa05g01302 1144 Pfam Sodium/hydrogen exchanger family 33 443 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Csa05g01302 1144 PANTHER SODIUM/HYDROGEN EXCHANGER 25 972 IPR018422 GO:0006812|GO:0015299|GO:0016021
Csa05g01302 1144 Gene3D Jelly Rolls 701 863 IPR014710 -
Csa05g01302 1144 MobiDBLite consensus disorder prediction 987 1028 - -
Csa05g01302 1144 MobiDBLite consensus disorder prediction 1012 1026 - -
Csa05g01302 1144 Gene3D - 151 203 - -
Csa05g01302 1144 MobiDBLite consensus disorder prediction 1050 1073 - -
Csa05g01302 1144 PANTHER - 25 972 - -
Csa05g01302 1144 MobiDBLite consensus disorder prediction 1110 1128 - -
Csa05g01302 1144 ProSiteProfiles cAMP/cGMP binding motif profile. 737 840 IPR000595 -
Csa05g01302 1144 MobiDBLite consensus disorder prediction 1094 1131 - -
Csa05g01302 1144 MobiDBLite consensus disorder prediction 1052 1068 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g01302 Csa-Chr5:13822662 Csa07g00987 Csa-Chr7:8761829 1.91E-11 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g01302 - - csv:101209966 2201.4